Variant report

Variant	rs11135400
Chromosome Location	chr5:93305352-93305353
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10780124	0.82[JPT][hapmap]
rs12655164	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17314423	0.82[JPT][hapmap]
rs17594338	0.82[JPT][hapmap]
rs2167763	0.83[JPT][hapmap];0.83[YRI][hapmap]
rs61124570	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:93282200-93309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:93284800-93306400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr5:93287000-93307600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr5:93287800-93309400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:93289000-93311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr5:93290800-93305600	Weak transcription	Fetal Lung	lung
10	chr5:93290800-93307600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr5:93290800-93307600	Weak transcription	Spleen	Spleen
12	chr5:93290800-93309200	Weak transcription	Dnd41	blood
13	chr5:93290800-93309400	Weak transcription	Primary T cells from cord blood	blood
14	chr5:93291000-93307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr5:93292000-93307800	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:93292000-93309400	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:93292600-93311800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
19	chr5:93299400-93309600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr5:93299800-93307000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr5:93300200-93312000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:93303200-93307600	Weak transcription	Fetal Stomach	stomach
23	chr5:93303200-93311400	Weak transcription	Primary B cells from cord blood	blood
24	chr5:93304800-93305600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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