Variant report

Variant	rs12655164
Chromosome Location	chr5:93315990-93315991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11135400	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2167763	0.87[ASN][1000 genomes]
rs61124570	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
3	chr5:93311800-93326400	Weak transcription	Ovary	ovary
4	chr5:93312600-93330400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr5:93313600-93318200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:93313600-93326400	Weak transcription	Right Ventricle	heart
7	chr5:93314200-93327400	Weak transcription	Fetal Lung	lung
8	chr5:93314400-93316800	Weak transcription	Duodenum Mucosa	Duodenum
9	chr5:93314400-93317400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:93314400-93318200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr5:93314400-93319800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr5:93314400-93320200	Weak transcription	Liver	Liver
13	chr5:93314400-93336800	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:93314600-93337200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr5:93314800-93318200	Weak transcription	Primary B cells from cord blood	blood
16	chr5:93315000-93330200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:93315200-93318200	Weak transcription	Primary T cells from cord blood	blood
18	chr5:93315800-93316000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr5:93315800-93316200	ZNF genes & repeats	Fetal Kidney	kidney
20	chr5:93315800-93317000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
21	chr5:93315800-93317800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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