Variant report

Variant	rs61124570
Chromosome Location	chr5:93303095-93303096
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11135400	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12655164	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2167763	0.91[ASN][1000 genomes]
rs7737964	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv882384	chr5:93136661-93380123	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93194200-93307600	Weak transcription	Left Ventricle	heart
2	chr5:93263200-93326400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:93263400-93303800	Weak transcription	HSMMtube	muscle
4	chr5:93278000-93304800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:93282200-93309600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:93282800-93312000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr5:93284800-93306400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:93287000-93307600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr5:93287800-93309400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr5:93289000-93311200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:93290800-93304800	Weak transcription	Fetal Intestine Large	intestine
12	chr5:93290800-93305600	Weak transcription	Fetal Lung	lung
13	chr5:93290800-93307600	Weak transcription	Primary hematopoietic stem cells	blood
14	chr5:93290800-93307600	Weak transcription	Spleen	Spleen
15	chr5:93290800-93309200	Weak transcription	Dnd41	blood
16	chr5:93290800-93309400	Weak transcription	Primary T cells from cord blood	blood
17	chr5:93291000-93307000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr5:93291600-93304400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:93292000-93307800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr5:93292000-93309400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:93292400-93304200	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr5:93292600-93311800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr5:93297400-93349600	Weak transcription	Aorta	Aorta
24	chr5:93299400-93309600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr5:93299800-93307000	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr5:93300200-93312000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:93302200-93303200	Strong transcription	Primary B cells from cord blood	blood
28	chr5:93302400-93303600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:93302800-93303400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:93302800-93303400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr5:93302800-93304200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr5:93302800-93304400	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr5:93303000-93303200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
34	chr5:93303000-93304200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr5:93303000-93304400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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