Variant report

Variant	rs17596955
Chromosome Location	chr15:92556154-92556155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10468146	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs11856080	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];1.00[ASN][1000 genomes]
rs17518458	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17518540	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17518659	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17596793	0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17596814	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4078179	1.00[ASW][hapmap]
rs56112368	1.00[ASN][1000 genomes]
rs72755698	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72755701	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72755702	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72757413	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904498	chr15:92545284-92558234	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92550400-92556200	Enhancers	Primary T helper cells fromperipheralblood	blood
2	chr15:92550800-92562600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:92551200-92556400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr15:92551200-92557400	Enhancers	Ovary	ovary
5	chr15:92552200-92559000	Enhancers	Left Ventricle	heart
6	chr15:92552800-92561800	Weak transcription	Psoas Muscle	Psoas
7	chr15:92554000-92556800	Enhancers	Pancreas	Pancrea
8	chr15:92554000-92556800	Enhancers	Right Ventricle	heart
9	chr15:92554000-92559200	Enhancers	Brain Substantia Nigra	brain
10	chr15:92554200-92556600	Enhancers	Spleen	Spleen
11	chr15:92554200-92556800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:92554200-92559200	Enhancers	Brain Angular Gyrus	brain
13	chr15:92554200-92566200	Enhancers	Right Atrium	heart
14	chr15:92554800-92556400	Enhancers	Primary hematopoietic stem cells	blood
15	chr15:92554800-92556400	Enhancers	Fetal Heart	heart
16	chr15:92554800-92556600	Enhancers	Lung	lung
17	chr15:92554800-92556800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr15:92554800-92556800	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr15:92554800-92557200	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr15:92554800-92557600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:92555000-92556600	Enhancers	Aorta	Aorta
22	chr15:92555200-92556600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr15:92555400-92557400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr15:92555400-92564200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:92555600-92557000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr15:92555600-92557200	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr15:92555600-92557400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr15:92555600-92557400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:92555600-92557400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:92555600-92558400	Enhancers	Brain Anterior Caudate	brain
31	chr15:92555600-92563200	Enhancers	Brain Cingulate Gyrus	brain
32	chr15:92555600-92563200	Enhancers	Brain Hippocampus Middle	brain
33	chr15:92555600-92564000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr15:92555600-92565600	Weak transcription	Gastric	stomach
35	chr15:92555600-92570600	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr15:92555600-92576200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr15:92555800-92556400	Enhancers	HMEC	breast
38	chr15:92555800-92556600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:92555800-92557000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr15:92555800-92557200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr15:92555800-92557200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr15:92555800-92557400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr15:92555800-92557400	Weak transcription	Esophagus	oesophagus
44	chr15:92555800-92557600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr15:92555800-92558600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr15:92555800-92559000	Enhancers	Brain Inferior Temporal Lobe	brain
47	chr15:92555800-92560600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr15:92555800-92564200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr15:92556000-92557000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:92556000-92557400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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