Variant report

Variant	rs56112368
Chromosome Location	chr15:92544697-92544698
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10468146	1.00[ASN][1000 genomes]
rs11856080	1.00[ASN][1000 genomes]
rs17518458	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518540	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17596793	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17596814	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17596955	1.00[ASN][1000 genomes]
rs55681404	0.96[EUR][1000 genomes]
rs72755698	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72755701	1.00[ASN][1000 genomes]
rs72757413	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048635	chr15:92073294-92557339	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv534110	chr15:92397220-92592961	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92498200-92555000	Weak transcription	Gastric	stomach
2	chr15:92527400-92551400	Weak transcription	Aorta	Aorta
3	chr15:92535600-92548000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr15:92536000-92547400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr15:92536400-92548600	Weak transcription	Esophagus	oesophagus
6	chr15:92537800-92547200	Weak transcription	Small Intestine	intestine
7	chr15:92538200-92554800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr15:92543000-92545000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr15:92543000-92545000	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr15:92543000-92546800	Weak transcription	Psoas Muscle	Psoas
11	chr15:92543000-92552400	Weak transcription	Pancreas	Pancrea
12	chr15:92543400-92544800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:92543400-92545000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr15:92543400-92545400	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr15:92543600-92544800	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr15:92543600-92545200	Enhancers	Fetal Brain Male	brain
17	chr15:92543600-92550800	Enhancers	Brain Substantia Nigra	brain
18	chr15:92543800-92544800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr15:92543800-92544800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr15:92543800-92545000	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr15:92543800-92545400	Enhancers	Brain Angular Gyrus	brain
22	chr15:92544000-92544800	Enhancers	H1 Cell Line	embryonic stem cell
23	chr15:92544000-92544800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr15:92544000-92544800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:92544000-92544800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:92544000-92544800	Enhancers	Fetal Brain Female	brain
27	chr15:92544000-92545000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr15:92544000-92545200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:92544000-92545200	Enhancers	Fetal Heart	heart
30	chr15:92544000-92545400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr15:92544000-92545400	Enhancers	Brain Hippocampus Middle	brain
32	chr15:92544000-92545400	Enhancers	Lung	lung
33	chr15:92544000-92545600	Enhancers	Left Ventricle	heart
34	chr15:92544000-92545600	Enhancers	Right Atrium	heart
35	chr15:92544000-92546000	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr15:92544000-92547400	Enhancers	Right Ventricle	heart
37	chr15:92544200-92545000	Enhancers	Brain Germinal Matrix	brain
38	chr15:92544200-92546600	Weak transcription	Brain Anterior Caudate	brain
39	chr15:92544200-92547000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr15:92544200-92547400	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr15:92544200-92554800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
42	chr15:92544400-92544800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:92544400-92544800	Weak transcription	Brain Cingulate Gyrus	brain
44	chr15:92544400-92554800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr15:92544600-92544800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr15:92544600-92544800	Enhancers	Ovary	ovary
47	chr15:92544600-92544800	Enhancers	Spleen	Spleen
48	chr15:92544600-92548600	Weak transcription	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links