Variant report

Variant	rs17601580
Chromosome Location	chr6:132061420-132061421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1044548	1.00[CHD][hapmap]
rs1044558	1.00[CHD][hapmap]
rs11754555	1.00[ASN][1000 genomes]
rs11963615	1.00[CHD][hapmap]
rs17060673	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1804025	1.00[CHD][hapmap]
rs34612245	1.00[ASN][1000 genomes]
rs3844000	1.00[ASN][1000 genomes]
rs4383836	1.00[ASN][1000 genomes]
rs553	1.00[CHD][hapmap]
rs60069958	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66955249	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67626389	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67914728	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929159	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7741727	1.00[ASN][1000 genomes]
rs7767111	1.00[CHD][hapmap]
rs7767170	1.00[CHD][hapmap]
rs9493119	1.00[CHD][hapmap]
rs9493120	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv830809	chr6:131953928-132126417	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
4	nsv830810	chr6:131960923-132138396	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132040600-132063200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr6:132048200-132065200	Weak transcription	Liver	Liver
3	chr6:132048400-132065200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:132054000-132061800	Strong transcription	HepG2	liver
5	chr6:132055000-132065200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:132055200-132065800	Weak transcription	K562	blood
7	chr6:132057600-132063000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr6:132060400-132061600	Enhancers	Fetal Intestine Small	intestine
9	chr6:132061000-132065200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:132061200-132061600	Enhancers	NH-A	brain
11	chr6:132061200-132062200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132061200-132062200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr6:132061400-132061800	Enhancers	NHLF	lung
14	chr6:132061400-132062000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:132061400-132062200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:132061400-132062200	Enhancers	NHDF-Ad	bronchial
17	chr6:132061400-132062200	Enhancers	Osteobl	bone

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