Variant report

Variant	rs11963615
Chromosome Location	chr6:132216287-132216288
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132182612-132191683..6:132216114-132218210	Hela-S3	cervix:
2	chr6:132184593..132186743-chr6:132213739..132216634,2	MCF-7	breast:
3	6:132216114-132218210..6:132269655-132282174	Hela-S3	cervix:
4	6:132216114-132218210..6:132646256-132647474	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1044548	1.00[CHD][hapmap];0.92[TSI][hapmap]
rs1044558	1.00[CHD][hapmap];0.92[TSI][hapmap]
rs11963689	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11964389	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11965061	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17061009	1.00[CHD][hapmap]
rs17061019	1.00[CHD][hapmap]
rs17601580	1.00[CHD][hapmap]
rs1804025	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs553	1.00[CHD][hapmap];0.92[TSI][hapmap]
rs55986453	0.96[EUR][1000 genomes]
rs59958908	1.00[EUR][1000 genomes]
rs61347056	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73778611	1.00[EUR][1000 genomes]
rs73778612	1.00[EUR][1000 genomes]
rs7763896	1.00[CHD][hapmap]
rs7767111	1.00[CHD][hapmap];0.92[TSI][hapmap]
rs7767170	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs9493119	1.00[CHD][hapmap];0.92[TSI][hapmap]
rs9493120	1.00[CHD][hapmap];0.92[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132185200-132217200	Weak transcription	Psoas Muscle	Psoas
2	chr6:132210200-132217600	Weak transcription	HSMM	muscle
3	chr6:132211400-132216600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:132211800-132217800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:132212200-132219000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:132212800-132218400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:132213000-132218000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:132213000-132218000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:132213400-132217000	Enhancers	Fetal Intestine Large	intestine
10	chr6:132214000-132216400	Weak transcription	Fetal Muscle Leg	muscle
11	chr6:132214000-132217000	Weak transcription	Fetal Stomach	stomach
12	chr6:132214400-132221600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr6:132214600-132216600	Weak transcription	Osteobl	bone
14	chr6:132214600-132216800	Enhancers	Fetal Intestine Small	intestine
15	chr6:132214600-132218600	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:132214800-132217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:132215000-132217800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr6:132215000-132217800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr6:132215600-132216400	Enhancers	Ovary	ovary
20	chr6:132215600-132217000	Flanking Active TSS	HepG2	liver
21	chr6:132215800-132216400	Enhancers	Fetal Kidney	kidney
22	chr6:132215800-132216400	Enhancers	Pancreas	Pancrea
23	chr6:132215800-132216600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:132216000-132216600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:132216000-132216600	Enhancers	Adipose Nuclei	Adipose
26	chr6:132216200-132216400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr6:132216200-132216400	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr6:132216200-132216400	Active TSS	Rectal Mucosa Donor 31	rectum
29	chr6:132216200-132216400	Enhancers	NHLF	lung
30	chr6:132216200-132216800	Active TSS	Stomach Mucosa	stomach
31	chr6:132216200-132217000	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:132216200-132218000	Enhancers	Liver	Liver

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