Variant report

Variant	rs17061019
Chromosome Location	chr6:132408772-132408773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PBX3	chr6:132408508-132409037	SK-N-SH	brain:	n/a	n/a
2	STAT3	chr6:132408675-132408909	MCF10A-Er-Src	breast:	n/a	chr6:132408785-132408793 chr6:132408802-132408810
3	FOS	chr6:132408606-132408903	HUVEC	blood vessel:	n/a	chr6:132408722-132408733
4	NFIC	chr6:132408368-132408995	SK-N-SH	brain:	n/a	n/a
5	GATA2	chr6:132408346-132408916	HUVEC	blood vessel:	n/a	n/a
6	STAT3	chr6:132408642-132408921	MCF10A-Er-Src	breast:	n/a	chr6:132408785-132408793 chr6:132408802-132408810
7	GATA3	chr6:132408290-132409100	SK-N-SH	brain:	n/a	n/a
8	GATA3	chr6:132408124-132408960	SK-N-SH	brain:	n/a	n/a
9	PBX3	chr6:132408404-132408954	SK-N-SH	brain:	n/a	n/a
10	STAT3	chr6:132408693-132408952	MCF10A-Er-Src	breast:	n/a	chr6:132408785-132408793 chr6:132408802-132408810
11	EP300	chr6:132408518-132408984	SK-N-SH_RA	brain:	n/a	n/a
12	EP300	chr6:132408507-132408909	SK-N-SH_RA	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000236166	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1044548	1.00[CHD][hapmap]
rs1044558	1.00[CHD][hapmap]
rs10484455	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11963615	1.00[CHD][hapmap]
rs17060991	1.00[CEU][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060994	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060997	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061009	1.00[CEU][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1804025	1.00[CHD][hapmap]
rs2223260	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553	1.00[CHD][hapmap]
rs57701703	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539486	1.00[ASN][1000 genomes]
rs58666272	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58750260	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60748786	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60749398	1.00[ASN][1000 genomes]
rs60853604	1.00[ASN][1000 genomes]
rs61373331	1.00[ASN][1000 genomes]
rs6909118	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935988	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545590	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545593	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545598	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545602	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547567	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547578	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547585	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547587	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745875	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7763896	1.00[CHD][hapmap]
rs7769612	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9493119	1.00[CHD][hapmap]
rs9493120	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132404000-132410400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:132405800-132409600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:132406600-132408800	Enhancers	HSMM	muscle
4	chr6:132406600-132409000	Enhancers	NH-A	brain
5	chr6:132406800-132408800	Enhancers	Brain Germinal Matrix	brain
6	chr6:132406800-132409200	Enhancers	Osteobl	bone
7	chr6:132406800-132409600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:132406800-132409600	Enhancers	HUVEC	blood vessel
9	chr6:132406800-132410000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:132406800-132410400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:132407000-132409000	Enhancers	Fetal Heart	heart
12	chr6:132407000-132409000	Enhancers	NHLF	lung
13	chr6:132407200-132409400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:132407200-132410000	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:132407200-132411600	Weak transcription	Pancreas	Pancrea
16	chr6:132407200-132420400	Weak transcription	Aorta	Aorta
17	chr6:132407800-132408800	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr6:132408000-132408800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:132408000-132408800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:132408000-132408800	Enhancers	Brain Substantia Nigra	brain
21	chr6:132408000-132409000	Enhancers	Fetal Stomach	stomach
22	chr6:132408000-132409400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr6:132408200-132408800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:132408200-132408800	Enhancers	Brain Angular Gyrus	brain
25	chr6:132408200-132409000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:132408200-132409000	Enhancers	NHDF-Ad	bronchial
27	chr6:132408200-132417600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:132408400-132409200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:132408600-132408800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:132408600-132408800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:132408600-132408800	Enhancers	Fetal Kidney	kidney
32	chr6:132408600-132408800	Enhancers	Fetal Lung	lung
33	chr6:132408600-132408800	Enhancers	Rectal Smooth Muscle	rectum
34	chr6:132408600-132409000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:132408600-132409000	Enhancers	Brain Hippocampus Middle	brain
36	chr6:132408600-132409000	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr6:132408600-132409600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:132408600-132410200	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr6:132408600-132411000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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