Variant report

Variant	rs6909118
Chromosome Location	chr6:132384511-132384512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132384441-132386945	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484455	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060991	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060994	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060997	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061009	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061019	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223260	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57701703	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539486	1.00[ASN][1000 genomes]
rs58666272	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58750260	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60748786	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60749398	1.00[ASN][1000 genomes]
rs60853604	1.00[ASN][1000 genomes]
rs61373331	1.00[ASN][1000 genomes]
rs6935988	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545565	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545573	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545585	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545590	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545598	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545602	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547567	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547578	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547587	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745875	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769612	1.00[CEU][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132379200-132385600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:132379200-132386200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:132379400-132385600	Enhancers	NHDF-Ad	bronchial
5	chr6:132379600-132386200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr6:132381400-132386800	Enhancers	NH-A	brain
7	chr6:132381800-132387000	Enhancers	HSMM	muscle
8	chr6:132382400-132384800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:132382400-132385200	Enhancers	NHLF	lung
10	chr6:132382600-132385200	Enhancers	Ovary	ovary
11	chr6:132383400-132384800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:132383600-132385200	Enhancers	Aorta	Aorta
13	chr6:132383800-132384600	Enhancers	Fetal Muscle Leg	muscle
14	chr6:132383800-132385600	Enhancers	A549	lung
15	chr6:132383800-132385800	Enhancers	Osteobl	bone
16	chr6:132383800-132386200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:132384000-132385600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:132384000-132387600	Enhancers	HMEC	breast
19	chr6:132384200-132384600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr6:132384200-132384800	Weak transcription	Brain Anterior Caudate	brain
21	chr6:132384200-132385200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:132384200-132385400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr6:132384200-132385400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr6:132384200-132385400	Enhancers	HSMMtube	muscle
25	chr6:132384400-132385000	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr6:132384400-132385200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr6:132384400-132385200	Enhancers	Fetal Heart	heart
28	chr6:132384400-132385400	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:132384400-132385400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr6:132384400-132385400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:132384400-132385400	Enhancers	Rectal Smooth Muscle	rectum
32	chr6:132384400-132385600	Enhancers	HepG2	liver
33	chr6:132384400-132386000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:132384400-132386200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:132384400-132387000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:132384400-132387400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:132384400-132387600	Enhancers	NHEK	skin
38	chr6:132384400-132389200	Enhancers	HUVEC	blood vessel

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