Variant report

Variant	rs73545573
Chromosome Location	chr6:132378009-132378010
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	6:132269655-132282174..6:132373869-132383497	GM12878	blood:
2	6:132176847-132180372..6:132373869-132383497	K562	blood:
3	6:132182612-132191683..6:132373869-132383497	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000197594	Chromatin interaction
ENSG00000227220	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484455	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060991	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060994	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060997	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061009	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061019	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223260	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57701703	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539486	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58666272	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58750260	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60748786	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60749398	1.00[ASN][1000 genomes]
rs60853604	1.00[ASN][1000 genomes]
rs61373331	1.00[ASN][1000 genomes]
rs6909118	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935988	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545565	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545585	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545590	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545593	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545598	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545602	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547567	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547578	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547585	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547587	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745875	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769612	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3491956	chr6:132373959-132380057	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3491953	chr6:132374434-132379932	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv3491957	chr6:132374521-132379465	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3474263	chr6:132375031-132379054	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3474264	chr6:132375072-132379038	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3491955	chr6:132375078-132379063	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3491954	chr6:132375112-132379027	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	esv3491950	chr6:132375118-132378983	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv3491958	chr6:132375118-132378983	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
11	esv3474265	chr6:132375195-132378902	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
12	esv9824	chr6:132375570-132378995	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132375000-132384800	Weak transcription	Pancreas	Pancrea
2	chr6:132376200-132378200	Weak transcription	NHDF-Ad	bronchial
3	chr6:132376200-132379200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:132376200-132379400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:132376200-132379400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132376200-132379400	Weak transcription	Osteobl	bone
7	chr6:132376200-132380600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr6:132376600-132380200	Weak transcription	NHLF	lung
9	chr6:132376600-132384400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:132377400-132379800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr6:132378000-132378600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links