Variant report
| Variant | rs60853604 |
|---|---|
| Chromosome Location | chr6:132366297-132366298 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000118523 | Chromatin interaction |
| ENSG00000227220 | Chromatin interaction |
| ENSG00000079931 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10484455 | 1.00[ASN][1000 genomes] |
| rs17060991 | 1.00[ASN][1000 genomes] |
| rs17060994 | 1.00[ASN][1000 genomes] |
| rs17060997 | 1.00[ASN][1000 genomes] |
| rs17061009 | 1.00[ASN][1000 genomes] |
| rs17061019 | 1.00[ASN][1000 genomes] |
| rs2223260 | 1.00[ASN][1000 genomes] |
| rs57701703 | 1.00[ASN][1000 genomes] |
| rs58539486 | 0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58666272 | 1.00[ASN][1000 genomes] |
| rs58750260 | 1.00[ASN][1000 genomes] |
| rs60748786 | 1.00[ASN][1000 genomes] |
| rs60749398 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61373331 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6909118 | 1.00[ASN][1000 genomes] |
| rs6935988 | 1.00[ASN][1000 genomes] |
| rs73545565 | 1.00[ASN][1000 genomes] |
| rs73545573 | 1.00[ASN][1000 genomes] |
| rs73545585 | 1.00[ASN][1000 genomes] |
| rs73545590 | 1.00[ASN][1000 genomes] |
| rs73545593 | 1.00[ASN][1000 genomes] |
| rs73545598 | 1.00[ASN][1000 genomes] |
| rs73545602 | 1.00[ASN][1000 genomes] |
| rs73547567 | 1.00[ASN][1000 genomes] |
| rs73547578 | 1.00[ASN][1000 genomes] |
| rs73547585 | 1.00[ASN][1000 genomes] |
| rs73547587 | 1.00[ASN][1000 genomes] |
| rs7745875 | 1.00[ASN][1000 genomes] |
| rs7769612 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427768 | chr6:132300468-132398477 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
