Variant report

Variant	rs17060997
Chromosome Location	chr6:132390501-132390502
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132386945-132395246	GM12878	blood:
2	6:132182612-132191683..6:132386945-132395246	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10484455	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060991	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17060994	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17061019	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2223260	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57701703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58539486	1.00[ASN][1000 genomes]
rs58666272	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58750260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60748786	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60749398	1.00[ASN][1000 genomes]
rs60853604	1.00[ASN][1000 genomes]
rs61373331	1.00[ASN][1000 genomes]
rs6909118	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935988	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545565	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545573	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545585	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545590	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545593	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545598	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73545602	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547567	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547578	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547585	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73547587	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745875	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769612	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132385200-132390600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:132385200-132391400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:132385400-132391600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:132385400-132391600	Weak transcription	HSMMtube	muscle
5	chr6:132386200-132391600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:132386200-132394200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132387000-132391200	Weak transcription	HSMM	muscle
8	chr6:132387400-132391600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:132387600-132391400	Weak transcription	HMEC	breast
10	chr6:132387600-132391400	Weak transcription	NHEK	skin
11	chr6:132389000-132391600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:132389200-132390600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:132389200-132392800	Weak transcription	HUVEC	blood vessel
14	chr6:132389200-132394000	Weak transcription	NHDF-Ad	bronchial
15	chr6:132389400-132390800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:132390000-132390800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:132390400-132390800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr6:132390400-132390800	Enhancers	Osteobl	bone

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