Variant report

Variant	rs17603897
Chromosome Location	chr8:87155037-87155038
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87153151..87158884-chr8:87159008..87162555,5	MCF-7	breast:
2	chr8:87152537..87155754-chr8:87352962..87356622,6	MCF-7	breast:
3	chr8:87154721..87156473-chr8:87354419..87356227,3	MCF-7	breast:
4	chr8:87153824..87155791-chr8:87158636..87161687,3	MCF-7	breast:
5	chr6:17392280..17394082-chr8:87153863..87156239,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254231	Chromatin interaction
ENSG00000123124	Chromatin interaction
ENSG00000112186	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10504822	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs10956187	1.00[ASN][1000 genomes]
rs11773973	0.91[MEX][hapmap]
rs11775865	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11777360	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11779493	1.00[ASN][1000 genomes]
rs11780633	1.00[ASN][1000 genomes]
rs11781321	0.87[CEU][hapmap]
rs12155685	0.86[CEU][hapmap];1.00[ASN][1000 genomes]
rs17602780	1.00[CHD][hapmap]
rs17603302	0.91[MEX][hapmap]
rs17663224	1.00[ASN][1000 genomes]
rs2954344	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2976188	0.93[CEU][hapmap];1.00[ASN][1000 genomes]
rs2976189	0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs2976191	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs3923637	1.00[ASN][1000 genomes]
rs4076882	1.00[ASN][1000 genomes]
rs41495352	1.00[ASN][1000 genomes]
rs4990403	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55778300	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57583365	1.00[ASN][1000 genomes]
rs57636336	1.00[ASN][1000 genomes]
rs59369794	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66717303	1.00[ASN][1000 genomes]
rs6993800	0.90[EUR][1000 genomes]
rs6997770	0.87[CEU][hapmap];0.81[GIH][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs72686768	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7812868	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7815369	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17603897	ATP6V0D2	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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