Variant report

Variant	rs55778300
Chromosome Location	chr8:87141263-87141264
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87139997..87142245-chr8:87354978..87357036,3	MCF-7	breast:
2	chr8:87136101..87138942-chr8:87140052..87142177,2	MCF-7	breast:
3	chr8:87140643..87142707-chr8:87352370..87355079,2	MCF-7	breast:
4	chr8:87140058..87143354-chr8:87147173..87150583,3	MCF-7	breast:
5	chr8:87140754..87142619-chr8:87176258..87179083,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000123124	Chromatin interaction
ENSG00000254231	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11773973	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11774727	0.81[ASN][1000 genomes]
rs11775865	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777360	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11783077	0.81[ASN][1000 genomes]
rs11783432	0.81[ASN][1000 genomes]
rs11784158	0.81[ASN][1000 genomes]
rs16898059	0.81[ASN][1000 genomes]
rs17603897	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34887568	0.81[ASN][1000 genomes]
rs35060350	0.81[ASN][1000 genomes]
rs35678028	0.81[ASN][1000 genomes]
rs35709441	0.81[ASN][1000 genomes]
rs35774645	0.81[ASN][1000 genomes]
rs41533445	0.81[ASN][1000 genomes]
rs55722219	0.81[ASN][1000 genomes]
rs55838745	0.81[ASN][1000 genomes]
rs56241709	0.81[ASN][1000 genomes]
rs66812560	0.81[ASN][1000 genomes]
rs66918501	0.81[ASN][1000 genomes]
rs67157692	0.81[ASN][1000 genomes]
rs67311777	0.81[ASN][1000 genomes]
rs67981627	0.81[ASN][1000 genomes]
rs67997223	0.81[ASN][1000 genomes]
rs68107928	0.81[ASN][1000 genomes]
rs6993800	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6997770	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72686768	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72686796	0.81[ASN][1000 genomes]
rs72686798	0.81[ASN][1000 genomes]
rs72688504	0.81[ASN][1000 genomes]
rs72688510	0.81[ASN][1000 genomes]
rs73269478	0.81[ASN][1000 genomes]
rs7812868	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv1028959	chr8:86835367-87142383	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv891148	chr8:86987886-87149808	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
8	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87136400-87144200	Weak transcription	Fetal Heart	heart
2	chr8:87137400-87142800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr8:87137400-87142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:87138600-87141800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:87138600-87143400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr8:87139600-87142200	Enhancers	HepG2	liver
7	chr8:87140000-87141800	Enhancers	Liver	Liver
8	chr8:87140600-87141600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:87140600-87141600	Enhancers	Fetal Intestine Large	intestine
10	chr8:87140800-87141400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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