Variant report

Variant	rs55838745
Chromosome Location	chr8:87153904-87153905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:87153151..87158884-chr8:87159008..87162555,5	MCF-7	breast:
2	chr8:87152537..87155754-chr8:87352962..87356622,6	MCF-7	breast:
3	chr8:87153824..87155791-chr8:87158636..87161687,3	MCF-7	breast:
4	chr6:17392280..17394082-chr8:87153863..87156239,2	MCF-7	breast:
5	chr8:87152205..87154768-chr8:87156337..87157922,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254231	Chromatin interaction
ENSG00000112186	Chromatin interaction
ENSG00000123124	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10113447	0.81[ASN][1000 genomes]
rs11774727	1.00[ASN][1000 genomes]
rs11775865	0.81[ASN][1000 genomes]
rs11783077	1.00[ASN][1000 genomes]
rs11783432	1.00[ASN][1000 genomes]
rs11784158	1.00[ASN][1000 genomes]
rs11785427	1.00[EUR][1000 genomes]
rs16898059	1.00[ASN][1000 genomes]
rs34887568	1.00[ASN][1000 genomes]
rs35060350	1.00[ASN][1000 genomes]
rs35678028	1.00[ASN][1000 genomes]
rs35709441	1.00[ASN][1000 genomes]
rs35774645	1.00[ASN][1000 genomes]
rs41533445	1.00[ASN][1000 genomes]
rs55722219	1.00[ASN][1000 genomes]
rs55778300	0.81[ASN][1000 genomes]
rs56241709	1.00[ASN][1000 genomes]
rs66503681	0.81[ASN][1000 genomes]
rs66812560	1.00[ASN][1000 genomes]
rs66918501	1.00[ASN][1000 genomes]
rs67157692	1.00[ASN][1000 genomes]
rs67311777	1.00[ASN][1000 genomes]
rs67705049	0.81[ASN][1000 genomes]
rs67981627	1.00[ASN][1000 genomes]
rs67997223	1.00[ASN][1000 genomes]
rs68107928	1.00[ASN][1000 genomes]
rs6993800	0.81[ASN][1000 genomes]
rs6997770	0.81[ASN][1000 genomes]
rs72686768	0.81[ASN][1000 genomes]
rs72686796	1.00[ASN][1000 genomes]
rs72686798	1.00[ASN][1000 genomes]
rs72688504	1.00[ASN][1000 genomes]
rs72688510	1.00[ASN][1000 genomes]
rs73269478	1.00[ASN][1000 genomes]
rs7812868	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428204	chr8:86405478-87312208	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	nsv529563	chr8:86467090-87381984	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv932023	chr8:86845979-87490694	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv891147	chr8:86886950-87333968	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv891149	chr8:87023306-87167184	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1034855	chr8:87040075-87168730	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv2761443	chr8:87109368-87170814	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv1020115	chr8:87111707-87167790	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1026646	chr8:87111707-87177368	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87153200-87154200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:87153800-87154200	Enhancers	Monocytes-CD14+_RO01746	blood

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