Variant report

Variant	rs1760516
Chromosome Location	chr1:95350496-95350497
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95348432..95350696-chr1:95351347..95353211,2	K562	blood:
2	chr1:95350050..95353595-chr1:95355510..95359061,4	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs859057	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs859065	0.98[ASN][1000 genomes]
rs859066	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs859067	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs859068	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs859069	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs859070	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs859071	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs859072	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859073	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:95342600-95356000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:95344600-95356000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:95346400-95353800	Strong transcription	Fetal Intestine Small	intestine
8	chr1:95347000-95350800	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr1:95347800-95354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:95348000-95350800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:95348000-95354400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr1:95348200-95352400	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:95348400-95350600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:95348400-95360200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr1:95348600-95351000	Enhancers	NHLF	lung
16	chr1:95348600-95351600	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr1:95348800-95350600	Enhancers	Placenta	Placenta
18	chr1:95348800-95351400	Enhancers	Ovary	ovary
19	chr1:95348800-95351400	Enhancers	HSMMtube	muscle
20	chr1:95348800-95354800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr1:95348800-95354800	Enhancers	Fetal Muscle Leg	muscle
22	chr1:95348800-95360800	Weak transcription	Lung	lung
23	chr1:95349000-95350600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr1:95349000-95351000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr1:95349000-95351200	Enhancers	Muscle Satellite Cultured Cells	--
26	chr1:95349000-95352400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr1:95349000-95357800	Weak transcription	Pancreas	Pancrea
28	chr1:95349200-95350600	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr1:95349200-95351200	Enhancers	Brain Substantia Nigra	brain
30	chr1:95349400-95350800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr1:95349400-95350800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr1:95349600-95351000	Enhancers	Gastric	stomach
33	chr1:95349800-95350600	Enhancers	Brain Hippocampus Middle	brain
34	chr1:95349800-95350800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:95349800-95350800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr1:95349800-95359800	Weak transcription	HUVEC	blood vessel
37	chr1:95349800-95364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr1:95350000-95350800	Weak transcription	Brain Anterior Caudate	brain
39	chr1:95350000-95350800	Weak transcription	Fetal Intestine Large	intestine
40	chr1:95350000-95351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:95350000-95351600	Weak transcription	Fetal Muscle Trunk	muscle
42	chr1:95350000-95351800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:95350000-95356800	Weak transcription	Liver	Liver
44	chr1:95350000-95357800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:95350000-95357800	Weak transcription	Left Ventricle	heart
46	chr1:95350000-95360800	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr1:95350200-95351200	Enhancers	HepG2	liver
48	chr1:95350200-95351800	Enhancers	Stomach Smooth Muscle	stomach
49	chr1:95350200-95356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:95350200-95358400	Weak transcription	Stomach Mucosa	stomach

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