Variant report

Variant	rs859072
Chromosome Location	chr1:95350884-95350885
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95350050..95353595-chr1:95355510..95359061,4	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17112682	0.82[GIH][hapmap];0.80[ASN][1000 genomes]
rs1760516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859057	1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs859065	1.00[CHB][hapmap];0.98[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.94[MKK][hapmap];0.99[ASN][1000 genomes]
rs859066	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs859067	0.83[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859068	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859069	0.88[CEU][hapmap];0.89[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs859071	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs859073	0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs859072	BARHL2	cis	parietal	SCAN
rs859072	CNN3	cis	parietal	SCAN

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95329000-95385000	Weak transcription	Colonic Mucosa	Colon
2	chr1:95333200-95370000	Weak transcription	Small Intestine	intestine
3	chr1:95340200-95361200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:95342600-95356000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr1:95343400-95361400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:95344600-95356000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr1:95346400-95353800	Strong transcription	Fetal Intestine Small	intestine
8	chr1:95347800-95354800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:95348000-95354400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr1:95348200-95352400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr1:95348400-95360200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr1:95348600-95351000	Enhancers	NHLF	lung
13	chr1:95348600-95351600	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:95348800-95351400	Enhancers	Ovary	ovary
15	chr1:95348800-95351400	Enhancers	HSMMtube	muscle
16	chr1:95348800-95354800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:95348800-95354800	Enhancers	Fetal Muscle Leg	muscle
18	chr1:95348800-95360800	Weak transcription	Lung	lung
19	chr1:95349000-95351000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:95349000-95351200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:95349000-95352400	Enhancers	iPS-20b Cell Line	embryonic stem cell
22	chr1:95349000-95357800	Weak transcription	Pancreas	Pancrea
23	chr1:95349200-95351200	Enhancers	Brain Substantia Nigra	brain
24	chr1:95349600-95351000	Enhancers	Gastric	stomach
25	chr1:95349800-95359800	Weak transcription	HUVEC	blood vessel
26	chr1:95349800-95364200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:95350000-95351600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr1:95350000-95351600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr1:95350000-95351800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr1:95350000-95356800	Weak transcription	Liver	Liver
31	chr1:95350000-95357800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr1:95350000-95357800	Weak transcription	Left Ventricle	heart
33	chr1:95350000-95360800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:95350200-95351200	Enhancers	HepG2	liver
35	chr1:95350200-95351800	Enhancers	Stomach Smooth Muscle	stomach
36	chr1:95350200-95356600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr1:95350200-95358400	Weak transcription	Stomach Mucosa	stomach
38	chr1:95350200-95361000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr1:95350200-95361000	Weak transcription	Adipose Nuclei	Adipose
40	chr1:95350200-95361000	Weak transcription	Fetal Heart	heart
41	chr1:95350200-95361400	Weak transcription	A549	lung
42	chr1:95350400-95351000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr1:95350400-95351600	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr1:95350400-95351600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr1:95350400-95351600	Weak transcription	Fetal Stomach	stomach
46	chr1:95350400-95351800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr1:95350400-95352000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr1:95350400-95352000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:95350400-95352200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
50	chr1:95350400-95352200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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