Variant report

Variant	rs17606522
Chromosome Location	chr1:219844649-219844650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12035801	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1416001	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17006547	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17605852	1.00[AFR][1000 genomes]
rs61677257	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6541235	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427919	chr1:219686879-219860681	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:219840200-219849200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr1:219840600-219844800	Weak transcription	Left Ventricle	heart
3	chr1:219840600-219844800	Weak transcription	Right Atrium	heart
4	chr1:219840600-219844800	Weak transcription	Right Ventricle	heart
5	chr1:219842400-219845800	Enhancers	Fetal Heart	heart
6	chr1:219842600-219846000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:219844200-219845800	Enhancers	Psoas Muscle	Psoas
8	chr1:219844400-219849000	Weak transcription	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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