Variant report

Variant	rs17607513
Chromosome Location	chr7:15504001-15504002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10251581	0.83[EUR][1000 genomes]
rs11766612	0.84[EUR][1000 genomes]
rs11766694	0.84[EUR][1000 genomes]
rs11769498	0.80[EUR][1000 genomes]
rs11770754	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11773463	0.88[EUR][1000 genomes]
rs28660534	0.86[EUR][1000 genomes]
rs73288453	0.86[EUR][1000 genomes]
rs73288487	0.95[EUR][1000 genomes]
rs73288499	0.87[EUR][1000 genomes]
rs7787840	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7789097	0.86[EUR][1000 genomes]
rs7797027	0.85[EUR][1000 genomes]
rs7801090	0.84[EUR][1000 genomes]
rs7803414	0.91[EUR][1000 genomes]
rs7806636	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032569	chr7:14905287-15597069	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1021172	chr7:14944318-15548794	Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv538743	chr7:14944318-15548794	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1028314	chr7:15336831-15555412	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1033428	chr7:15343210-15554763	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023086	chr7:15368522-15554763	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv538746	chr7:15368522-15554763	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv606295	chr7:15397449-15547950	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1031116	chr7:15428343-15568587	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1028545	chr7:15440202-15554763	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538747	chr7:15440202-15554763	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv887729	chr7:15444355-15580078	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv606296	chr7:15468199-15538772	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv887730	chr7:15482111-15580078	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv887731	chr7:15486895-15580078	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
17	nsv523674	chr7:15503313-15547950	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv523691	chr7:15503313-15547950	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15496000-15504800	Enhancers	NHDF-Ad	bronchial
2	chr7:15499200-15504800	Weak transcription	Fetal Muscle Leg	muscle
3	chr7:15500400-15504600	Enhancers	Osteobl	bone
4	chr7:15500600-15504800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr7:15500600-15504800	Enhancers	NHLF	lung
6	chr7:15502000-15504600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:15502400-15504800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:15502600-15504800	Enhancers	Adipose Nuclei	Adipose
9	chr7:15503000-15505000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:15503600-15504400	Enhancers	Fetal Lung	lung
11	chr7:15503600-15504600	Enhancers	Rectal Smooth Muscle	rectum
12	chr7:15503800-15504200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr7:15503800-15504400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:15503800-15504600	Weak transcription	Fetal Stomach	stomach
15	chr7:15504000-15504200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr7:15504000-15504400	Flanking Active TSS	Fetal Heart	heart
17	chr7:15504000-15504800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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