Variant report
| Variant | rs1760824 |
|---|---|
| Chromosome Location | chr13:89170627-89170628 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs1334175 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1334181 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1334182 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1334185 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1334186 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1572177 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1572178 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1572181 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1671709 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1855708 | 1.00[ASN][1000 genomes] |
| rs2347543 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2347544 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2445072 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs392742 | 1.00[ASN][1000 genomes] |
| rs402428 | 1.00[ASN][1000 genomes] |
| rs431969 | 0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4354796 | 0.87[EUR][1000 genomes] |
| rs454007 | 1.00[ASN][1000 genomes] |
| rs519700 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs640020 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs694111 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8001353 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv900810 | chr13:88963676-89189142 | Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv900814 | chr13:89098616-89189142 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv900815 | chr13:89098616-89216190 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv870345 | chr13:89164439-89295782 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:89169800-89171000 | Active TSS | H9 Cell Line | embryonic stem cell |
| 2 | chr13:89170600-89171400 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
