Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1334175	1.00[ASN][1000 genomes]
rs1334181	1.00[ASN][1000 genomes]
rs1334182	1.00[ASN][1000 genomes]
rs1334185	1.00[ASN][1000 genomes]
rs1334186	1.00[ASN][1000 genomes]
rs1572177	1.00[ASN][1000 genomes]
rs1572178	1.00[ASN][1000 genomes]
rs1572181	1.00[ASN][1000 genomes]
rs1671709	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1760824	1.00[ASN][1000 genomes]
rs1855708	1.00[ASN][1000 genomes]
rs2347543	1.00[ASN][1000 genomes]
rs2347544	1.00[ASN][1000 genomes]
rs2445072	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs392742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs402428	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs431969	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs519700	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs640020	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs694111	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72632567	1.00[ASN][1000 genomes]
rs7996551	1.00[CEU][hapmap]
rs8001353	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037729	chr13:88728499-89127873	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541864	chr13:88728499-89127873	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv900809	chr13:88963676-89135721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv900810	chr13:88963676-89189142	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv900814	chr13:89098616-89189142	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv900815	chr13:89098616-89216190	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:89104200-89113200	Weak transcription	Fetal Heart	heart
2	chr13:89106200-89106600	Enhancers	Gastric	stomach

Quick Search: