Variant report

Variant	rs17608833
Chromosome Location	chr6:12079460-12079461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12077082..12079986-chr6:12084053..12086000,2	K562	blood:
2	chr6:12078164..12081680-chr6:12081871..12086825,6	K562	blood:
3	chr6:12072774..12077431-chr6:12078075..12082472,6	K562	blood:
4	chr6:12075931..12077554-chr6:12077856..12080124,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs13198374	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13201819	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13212720	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13215677	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13219465	0.94[CEU][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17608729	1.00[ASW][hapmap];1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.96[TSI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17608813	0.88[CEU][hapmap];0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17608874	0.94[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17608937	0.94[CEU][hapmap];0.88[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1983883	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2327511	0.94[CEU][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs34105568	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35341148	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4454118	0.83[EUR][1000 genomes]
rs4598055	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs67632693	0.89[EUR][1000 genomes]
rs6916070	0.88[GIH][hapmap]
rs71533613	0.92[AMR][1000 genomes]
rs71551285	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71551286	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71551288	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71551289	0.81[AMR][1000 genomes]
rs71551290	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs71551291	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72826052	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12061400-12081600	Weak transcription	Small Intestine	intestine
2	chr6:12061600-12084000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:12061600-12085400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:12061600-12105200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr6:12061600-12109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:12061800-12081400	Weak transcription	Primary B cells from cord blood	blood
7	chr6:12061800-12082000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:12061800-12083600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:12065200-12095000	Weak transcription	NHDF-Ad	bronchial
10	chr6:12065800-12081600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:12065800-12081600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:12066200-12081600	Weak transcription	Lung	lung
13	chr6:12066400-12081200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:12066400-12081200	Weak transcription	Spleen	Spleen
15	chr6:12066400-12081400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:12066400-12081600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr6:12066400-12083600	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:12066400-12083600	Weak transcription	Brain Substantia Nigra	brain
19	chr6:12066400-12083600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr6:12066400-12085000	Weak transcription	Gastric	stomach
21	chr6:12066400-12085200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr6:12066400-12093000	Weak transcription	Fetal Thymus	thymus
23	chr6:12066400-12103600	Weak transcription	Pancreas	Pancrea
24	chr6:12066400-12107600	Weak transcription	Fetal Muscle Leg	muscle
25	chr6:12066600-12081400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr6:12066600-12084000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr6:12066800-12081000	Weak transcription	Primary B cells from peripheral blood	blood
28	chr6:12066800-12081600	Weak transcription	Brain Anterior Caudate	brain
29	chr6:12066800-12083600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr6:12066800-12083600	Weak transcription	HSMMtube	muscle
31	chr6:12066800-12085400	Weak transcription	Right Ventricle	heart
32	chr6:12066800-12109600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:12067000-12083600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr6:12068600-12090600	Weak transcription	Right Atrium	heart
35	chr6:12069600-12082200	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:12069600-12095200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr6:12070000-12090600	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr6:12070800-12120400	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr6:12071600-12081400	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr6:12071600-12091800	Weak transcription	Esophagus	oesophagus
41	chr6:12071600-12093000	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr6:12071800-12081400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr6:12071800-12081400	Weak transcription	Adipose Nuclei	Adipose
44	chr6:12071800-12083600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:12071800-12083600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:12071800-12094400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr6:12071800-12095400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr6:12071800-12098000	Weak transcription	NH-A	brain
49	chr6:12071800-12120400	Weak transcription	HepG2	liver
50	chr6:12072000-12083600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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