Variant report

Variant	rs71551286
Chromosome Location	chr6:12057040-12057041
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:12011871..12014421-chr6:12056028..12057877,2	MCF-7	breast:
2	chr6:12012044..12014216-chr6:12056273..12058352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs13198374	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13201819	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13212720	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13215677	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13219465	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17608729	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17608813	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17608833	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17608874	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1983883	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34105568	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35341148	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4454118	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4598055	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71533613	0.85[AMR][1000 genomes]
rs71551285	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71551288	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71551290	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs71551291	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72826052	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:12040200-12060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:12040400-12058800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:12040400-12059600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:12041000-12060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:12045600-12058200	Weak transcription	Small Intestine	intestine
7	chr6:12045600-12058600	Weak transcription	A549	lung
8	chr6:12045600-12058800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:12045600-12059800	Weak transcription	Left Ventricle	heart
10	chr6:12045600-12059800	Weak transcription	Psoas Muscle	Psoas
11	chr6:12045600-12061000	Weak transcription	Fetal Thymus	thymus
12	chr6:12045600-12061000	Weak transcription	Pancreas	Pancrea
13	chr6:12045600-12061200	Weak transcription	Gastric	stomach
14	chr6:12045600-12065800	Weak transcription	Aorta	Aorta
15	chr6:12045600-12066200	Weak transcription	HSMM	muscle
16	chr6:12045600-12066400	Weak transcription	Hela-S3	cervix
17	chr6:12045800-12066000	Weak transcription	HUVEC	blood vessel
18	chr6:12046000-12060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:12047800-12058800	Weak transcription	Esophagus	oesophagus
20	chr6:12047800-12059800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:12048000-12060800	Weak transcription	Fetal Intestine Small	intestine
22	chr6:12048000-12061200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr6:12048200-12058400	Weak transcription	Liver	Liver
24	chr6:12048200-12058400	Weak transcription	NHEK	skin
25	chr6:12048200-12060800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:12048200-12062800	Weak transcription	K562	blood
27	chr6:12048400-12058400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:12048600-12060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:12048600-12060800	Weak transcription	Fetal Intestine Large	intestine
30	chr6:12048600-12061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:12048600-12061200	Weak transcription	Fetal Stomach	stomach
32	chr6:12050600-12065800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr6:12050600-12066000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:12051200-12061000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr6:12051200-12061000	Weak transcription	Lung	lung
36	chr6:12052600-12060800	Weak transcription	Thymus	Thymus
37	chr6:12052600-12061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr6:12053000-12060800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr6:12053200-12058200	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:12053200-12058200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr6:12053400-12057600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr6:12053400-12058200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:12053400-12058800	Weak transcription	Colon Smooth Muscle	Colon
44	chr6:12053400-12060800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr6:12053600-12058200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr6:12053600-12058400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:12053800-12057600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr6:12054000-12057600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr6:12054000-12057600	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr6:12054000-12057800	Weak transcription	Primary monocytes fromperipheralblood	blood

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