Variant report
| Variant | rs17608839 |
|---|---|
| Chromosome Location | chr4:45120348-45120349 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10011979 | 0.91[EUR][1000 genomes] |
| rs10012591 | 0.91[EUR][1000 genomes] |
| rs12643633 | 0.91[EUR][1000 genomes] |
| rs12643794 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12644380 | 0.91[EUR][1000 genomes] |
| rs12647322 | 0.94[EUR][1000 genomes] |
| rs1304537 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.94[JPT][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1398262 | 0.81[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1512301 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs17654997 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17655015 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs17655141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1913020 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs28831693 | 0.91[EUR][1000 genomes] |
| rs34163634 | 0.91[EUR][1000 genomes] |
| rs4289476 | 0.91[EUR][1000 genomes] |
| rs4353935 | 0.91[EUR][1000 genomes] |
| rs4616792 | 0.91[EUR][1000 genomes] |
| rs4619934 | 0.91[EUR][1000 genomes] |
| rs4974512 | 0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs55853144 | 0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs59229206 | 0.94[EUR][1000 genomes] |
| rs59353624 | 0.91[EUR][1000 genomes] |
| rs59679816 | 0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs60564500 | 0.89[EUR][1000 genomes] |
| rs7439136 | 0.91[EUR][1000 genomes] |
| rs7440852 | 0.91[EUR][1000 genomes] |
| rs9790820 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531944 | chr4:44299343-45200700 | Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014327 | chr4:44735209-45218149 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv829919 | chr4:45069901-45253808 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45117800-45121400 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr4:45119600-45122200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
