Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10011979	0.90[EUR][1000 genomes]
rs10012591	0.90[EUR][1000 genomes]
rs12643633	0.90[EUR][1000 genomes]
rs12643794	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12644380	0.90[EUR][1000 genomes]
rs12647322	0.94[EUR][1000 genomes]
rs1304537	0.94[EUR][1000 genomes]
rs1398262	0.81[EUR][1000 genomes]
rs1512301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17608839	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17654997	0.94[EUR][1000 genomes]
rs17655015	0.94[EUR][1000 genomes]
rs17655141	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1913020	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28831693	0.90[EUR][1000 genomes]
rs34163634	0.90[EUR][1000 genomes]
rs4289476	0.90[EUR][1000 genomes]
rs4353935	0.90[EUR][1000 genomes]
rs4616792	0.90[EUR][1000 genomes]
rs4619934	0.90[EUR][1000 genomes]
rs4974512	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55853144	0.94[EUR][1000 genomes]
rs59229206	0.94[EUR][1000 genomes]
rs59353624	0.90[EUR][1000 genomes]
rs60564500	0.89[EUR][1000 genomes]
rs7439136	0.90[EUR][1000 genomes]
rs7440852	0.90[EUR][1000 genomes]
rs9790820	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv980200	chr4:45140665-45154939	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45125800-45174400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:45146800-45150200	Weak transcription	HSMM	muscle
3	chr4:45149400-45150600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr4:45149600-45150400	Enhancers	NH-A	brain

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