Variant report

Variant	rs17613128
Chromosome Location	chr5:16569071-16569072
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:16563744..16565317-chr5:16569034..16570898,2	K562	blood:
2	chr5:16552565..16553606-chr5:16568821..16570258,3	MCF-7	breast:
3	chr5:14870477..14872982-chr5:16567170..16569965,2	K562	blood:

Variant related genes	Relation type
ENSG00000272057	Chromatin interaction
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10078514	1.00[CEU][hapmap]
rs16868716	1.00[MEX][hapmap]
rs17540822	0.92[CEU][hapmap];1.00[MEX][hapmap]
rs2248104	1.00[CEU][hapmap]
rs2617432	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16543200-16591600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:16543600-16589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:16545000-16574600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr5:16549200-16580200	Weak transcription	Gastric	stomach
5	chr5:16553000-16573400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:16553400-16569600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr5:16553400-16572800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr5:16555200-16571400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:16556400-16569600	Weak transcription	Primary B cells from cord blood	blood
10	chr5:16559600-16574400	Weak transcription	Fetal Brain Female	brain
11	chr5:16561200-16574400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:16564400-16571400	Enhancers	Brain Hippocampus Middle	brain
13	chr5:16564400-16571600	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr5:16565600-16569200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:16565600-16573600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr5:16566000-16572800	Weak transcription	Fetal Brain Male	brain
17	chr5:16566000-16580200	Weak transcription	Right Ventricle	heart
18	chr5:16566200-16570400	Weak transcription	Psoas Muscle	Psoas
19	chr5:16566400-16573400	Weak transcription	Stomach Mucosa	stomach
20	chr5:16566800-16573000	Enhancers	Brain Cingulate Gyrus	brain
21	chr5:16567000-16570200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:16567000-16571000	Enhancers	Brain Angular Gyrus	brain
23	chr5:16567000-16571400	Enhancers	Brain Anterior Caudate	brain
24	chr5:16567400-16569600	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:16567600-16571400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr5:16567600-16574600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr5:16567800-16569400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:16567800-16571800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr5:16567800-16572000	Strong transcription	Primary T cells from cord blood	blood
30	chr5:16567800-16573400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr5:16567800-16574400	Weak transcription	Right Atrium	heart
32	chr5:16568000-16569800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr5:16568400-16569600	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr5:16568400-16574200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr5:16568600-16569200	Enhancers	Colon Smooth Muscle	Colon
36	chr5:16568600-16570400	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr5:16568600-16571200	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr5:16568600-16571400	Enhancers	NHDF-Ad	bronchial
39	chr5:16568800-16569600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:16568800-16569800	Enhancers	Fetal Heart	heart
41	chr5:16568800-16570800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr5:16568800-16571000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:16568800-16571000	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr5:16569000-16569200	Enhancers	HSMM	muscle
45	chr5:16569000-16569400	Active TSS	Stomach Smooth Muscle	stomach
46	chr5:16569000-16569400	Flanking Active TSS	NHEK	skin
47	chr5:16569000-16569600	Enhancers	Left Ventricle	heart
48	chr5:16569000-16569800	Enhancers	Brain Germinal Matrix	brain
49	chr5:16569000-16570800	Enhancers	Muscle Satellite Cultured Cells	--
50	chr5:16569000-16571000	Enhancers	HMEC	breast

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