Variant report

Variant	rs2617432
Chromosome Location	chr5:16574900-16574901
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10078514	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs17540822	0.92[CEU][hapmap]
rs17613128	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2248104	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59397845	0.86[EUR][1000 genomes]
rs62369719	0.86[EUR][1000 genomes]
rs62369721	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16543200-16591600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr5:16543600-16589800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr5:16549200-16580200	Weak transcription	Gastric	stomach
4	chr5:16566000-16580200	Weak transcription	Right Ventricle	heart
5	chr5:16569200-16580200	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:16570200-16575000	Weak transcription	Primary B cells from cord blood	blood
7	chr5:16571200-16575000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:16571400-16587200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:16571400-16588200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:16571600-16580800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr5:16572200-16576400	Enhancers	Liver	Liver
12	chr5:16572200-16578800	Weak transcription	Fetal Heart	heart
13	chr5:16572600-16576000	Enhancers	Brain Hippocampus Middle	brain
14	chr5:16572600-16576400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:16572800-16575800	Enhancers	Fetal Brain Male	brain
16	chr5:16572800-16576000	Enhancers	Brain Substantia Nigra	brain
17	chr5:16573000-16575000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr5:16573200-16576000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr5:16573400-16576000	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr5:16573400-16576000	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr5:16573400-16576000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr5:16573400-16576400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:16573600-16575400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr5:16573600-16576000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr5:16573600-16576000	Enhancers	Brain Anterior Caudate	brain
26	chr5:16573600-16576200	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr5:16573600-16581200	Weak transcription	Fetal Kidney	kidney
28	chr5:16573800-16585200	Weak transcription	Pancreas	Pancrea
29	chr5:16574000-16575800	Enhancers	Stomach Mucosa	stomach
30	chr5:16574200-16575200	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr5:16574200-16575600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr5:16574200-16575600	Enhancers	Primary T cells from cord blood	blood
33	chr5:16574200-16575600	Enhancers	Left Ventricle	heart
34	chr5:16574200-16575800	Enhancers	H9 Cell Line	embryonic stem cell
35	chr5:16574200-16575800	Enhancers	Psoas Muscle	Psoas
36	chr5:16574200-16575800	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr5:16574200-16576000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr5:16574200-16576000	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr5:16574200-16576000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
40	chr5:16574200-16576000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr5:16574200-16576000	Enhancers	Brain Cingulate Gyrus	brain
42	chr5:16574200-16576200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr5:16574200-16576400	Enhancers	Brain Inferior Temporal Lobe	brain
44	chr5:16574200-16585200	Weak transcription	Fetal Intestine Small	intestine
45	chr5:16574400-16575000	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr5:16574400-16575200	Flanking Active TSS	NHDF-Ad	bronchial
47	chr5:16574400-16575400	Enhancers	HUES48 Cell Line	embryonic stem cell
48	chr5:16574400-16575800	Enhancers	Adipose Nuclei	Adipose
49	chr5:16574400-16575800	Enhancers	Fetal Brain Female	brain
50	chr5:16574400-16576000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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