Variant report

Variant	rs62369719
Chromosome Location	chr5:16532417-16532418
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:16529119..16532127-chr5:16532204..16536269,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10078514	0.98[EUR][1000 genomes]
rs17540822	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2248104	0.89[EUR][1000 genomes]
rs2617432	0.86[EUR][1000 genomes]
rs59397845	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369721	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:16523600-16533800	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr5:16523600-16535400	Weak transcription	Pancreas	Pancrea
7	chr5:16523800-16539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:16524600-16533800	Weak transcription	Right Ventricle	heart
10	chr5:16525000-16540800	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr5:16525200-16540400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:16525600-16539200	Weak transcription	Gastric	stomach
14	chr5:16526400-16537400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr5:16527200-16533800	Weak transcription	Primary T cells from cord blood	blood
16	chr5:16527200-16534400	Weak transcription	Thymus	Thymus
17	chr5:16528600-16532800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr5:16529000-16537000	Weak transcription	Fetal Brain Male	brain
19	chr5:16529000-16538000	Weak transcription	Fetal Brain Female	brain
20	chr5:16530400-16535400	Weak transcription	Right Atrium	heart
21	chr5:16530600-16535400	Weak transcription	Fetal Muscle Trunk	muscle
22	chr5:16531000-16532800	Enhancers	Fetal Heart	heart
23	chr5:16531800-16536400	Weak transcription	Brain Anterior Caudate	brain
24	chr5:16532000-16534200	Weak transcription	Psoas Muscle	Psoas
25	chr5:16532000-16534400	Weak transcription	Fetal Muscle Leg	muscle
26	chr5:16532000-16534400	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr5:16532000-16535400	Weak transcription	Brain Hippocampus Middle	brain
28	chr5:16532000-16535600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:16532000-16538000	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr5:16532000-16538200	Weak transcription	Colonic Mucosa	Colon
31	chr5:16532000-16538200	Weak transcription	Fetal Intestine Large	intestine
32	chr5:16532200-16533800	Weak transcription	Left Ventricle	heart
33	chr5:16532200-16534400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr5:16532200-16535400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr5:16532200-16535400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr5:16532200-16535400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr5:16532200-16535600	Weak transcription	Brain Angular Gyrus	brain
38	chr5:16532200-16536200	Weak transcription	Brain Substantia Nigra	brain
39	chr5:16532200-16536200	Weak transcription	Fetal Intestine Small	intestine
40	chr5:16532200-16538400	Weak transcription	Small Intestine	intestine
41	chr5:16532200-16542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:16532400-16536000	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links