Variant report

Variant	rs62369721
Chromosome Location	chr5:16538852-16538853
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10078514	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17540822	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2248104	0.89[EUR][1000 genomes]
rs2617432	0.86[EUR][1000 genomes]
rs59397845	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62369678	0.81[AMR][1000 genomes]
rs62369681	0.81[AMR][1000 genomes]
rs62369714	0.81[AMR][1000 genomes]
rs62369719	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881187	chr5:16514269-16654960	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16516000-16540800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:16521600-16539600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr5:16522400-16567400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr5:16523400-16540800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr5:16523800-16539000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:16523800-16540800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr5:16525000-16540800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr5:16525000-16542000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr5:16525200-16540400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr5:16525600-16539200	Weak transcription	Gastric	stomach
11	chr5:16532200-16542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:16533200-16543200	Enhancers	Fetal Heart	heart
13	chr5:16533600-16539200	Weak transcription	Aorta	Aorta
14	chr5:16534200-16541800	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr5:16534400-16540200	Enhancers	Fetal Muscle Leg	muscle
16	chr5:16534400-16541200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr5:16535400-16539400	Enhancers	Left Ventricle	heart
18	chr5:16535400-16539800	Enhancers	Fetal Muscle Trunk	muscle
19	chr5:16535400-16543400	Enhancers	Brain Cingulate Gyrus	brain
20	chr5:16535600-16541200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:16535600-16546000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr5:16536200-16541200	Enhancers	Brain Angular Gyrus	brain
23	chr5:16536400-16539000	Enhancers	Psoas Muscle	Psoas
24	chr5:16536400-16541200	Enhancers	Brain Hippocampus Middle	brain
25	chr5:16536400-16541400	Enhancers	Brain Anterior Caudate	brain
26	chr5:16536800-16539000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:16536800-16539000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:16536800-16539000	Weak transcription	HMEC	breast
29	chr5:16536800-16541200	Enhancers	Brain Substantia Nigra	brain
30	chr5:16536800-16552800	Weak transcription	Thymus	Thymus
31	chr5:16537000-16539000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr5:16537000-16539000	Weak transcription	NH-A	brain
33	chr5:16537000-16539000	Weak transcription	NHEK	skin
34	chr5:16537200-16539200	Weak transcription	Pancreas	Pancrea
35	chr5:16537600-16542200	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr5:16537800-16539800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:16537800-16539800	Enhancers	Placenta	Placenta
38	chr5:16538000-16539000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:16538000-16539800	Enhancers	Rectal Mucosa Donor 29	rectum
40	chr5:16538200-16539000	Enhancers	Colon Smooth Muscle	Colon
41	chr5:16538200-16539200	Weak transcription	Right Atrium	heart
42	chr5:16538200-16540400	Enhancers	Fetal Intestine Large	intestine
43	chr5:16538200-16540600	Weak transcription	Primary T cells from cord blood	blood
44	chr5:16538200-16540600	Enhancers	Fetal Intestine Small	intestine
45	chr5:16538200-16541200	Enhancers	HSMM	muscle
46	chr5:16538200-16541200	Enhancers	HSMMtube	muscle
47	chr5:16538400-16540400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr5:16538400-16540600	Enhancers	Duodenum Mucosa	Duodenum
49	chr5:16538400-16541400	Enhancers	Muscle Satellite Cultured Cells	--
50	chr5:16538400-16542200	Weak transcription	Colonic Mucosa	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links