Variant report

Variant	rs17613706
Chromosome Location	chr19:35701695-35701696
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:35699735..35702638-chr19:35738803..35741415,2	K562	blood:
2	chr19:35700181..35702948-chr19:35738888..35740935,3	MCF-7	breast:
3	chr19:35699017..35701710-chr19:35704867..35706681,2	K562	blood:

Variant related genes	Relation type
ENSG00000105699	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10425846	0.89[EUR][1000 genomes]
rs12973118	1.00[ASN][1000 genomes]
rs1688012	0.94[CEU][hapmap]
rs17541474	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34461963	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34979825	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36101648	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs495570	1.00[CEU][hapmap]
rs498342	0.94[CEU][hapmap]
rs521055	0.94[CEU][hapmap]
rs538182	0.94[CEU][hapmap]
rs540818	0.94[CEU][hapmap]
rs565818	0.94[CEU][hapmap]
rs62111445	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7247282	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv2470	chr19:35655281-35702565	Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
5	nsv1067541	chr19:35698638-35712439	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1066553	chr19:35698638-35749563	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
7	esv2763203	chr19:35700047-35738400	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35693400-35707000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr19:35693600-35701800	Weak transcription	Right Atrium	heart
3	chr19:35694000-35704400	Enhancers	Primary T cells fromperipheralblood	blood
4	chr19:35694200-35708200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr19:35696600-35701800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:35696600-35704600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr19:35696800-35704600	Weak transcription	Colonic Mucosa	Colon
8	chr19:35697200-35702600	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr19:35697200-35702800	Weak transcription	Spleen	Spleen
10	chr19:35697400-35703200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:35697400-35704600	Weak transcription	Small Intestine	intestine
12	chr19:35697600-35702600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr19:35697800-35702600	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr19:35698000-35701800	Weak transcription	Thymus	Thymus
15	chr19:35698000-35701800	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr19:35698000-35702600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr19:35698000-35702600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr19:35698000-35702600	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr19:35698000-35708200	Enhancers	Primary B cells from peripheral blood	blood
20	chr19:35698000-35708200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr19:35698200-35708000	Enhancers	Primary B cells from cord blood	blood
22	chr19:35698600-35702600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr19:35699000-35702600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr19:35699200-35701800	Weak transcription	GM12878-XiMat	blood
25	chr19:35699200-35708000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr19:35700200-35701800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr19:35700400-35701800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr19:35700400-35702400	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr19:35700400-35702600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr19:35700400-35704200	Enhancers	Primary T cells from cord blood	blood
31	chr19:35700600-35707200	Enhancers	Primary hematopoietic stem cells	blood
32	chr19:35701200-35702600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr19:35701200-35702600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr19:35701200-35709400	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr19:35701400-35705600	Enhancers	Fetal Thymus	thymus
36	chr19:35701600-35702000	Enhancers	K562	blood
37	chr19:35701600-35702200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr19:35701600-35702800	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links