Variant report

Variant	rs17615296
Chromosome Location	chr11:36385236-36385237
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36384425..36387121-chr11:36398360..36400122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10501149	0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs11033575	0.84[CEU][hapmap]
rs58568327	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7925585	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36381200-36385600	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr11:36381600-36388400	Enhancers	Primary hematopoietic stem cells	blood
5	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:36382000-36385800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:36382000-36385800	Enhancers	Fetal Thymus	thymus
8	chr11:36382000-36386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:36382000-36386400	Enhancers	Placenta Amnion	Placenta Amnion
10	chr11:36382000-36386600	Enhancers	Fetal Intestine Small	intestine
11	chr11:36382000-36386800	Enhancers	Fetal Intestine Large	intestine
12	chr11:36382000-36387800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:36382200-36385400	Enhancers	HSMM	muscle
14	chr11:36382400-36386800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr11:36382400-36388600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr11:36382800-36387200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr11:36382800-36388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:36383200-36385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:36383200-36385600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:36383200-36386400	Enhancers	HSMMtube	muscle
22	chr11:36383400-36385400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
23	chr11:36383400-36386400	Enhancers	Small Intestine	intestine
24	chr11:36383600-36385800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:36383600-36386600	Enhancers	NH-A	brain
26	chr11:36383800-36385400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:36383800-36385400	Weak transcription	Brain Anterior Caudate	brain
28	chr11:36383800-36385400	Enhancers	NHLF	lung
29	chr11:36383800-36386400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr11:36383800-36386600	Enhancers	Fetal Kidney	kidney
31	chr11:36383800-36386600	Enhancers	Hela-S3	cervix
32	chr11:36383800-36386600	Enhancers	HMEC	breast
33	chr11:36383800-36386800	Enhancers	NHEK	skin
34	chr11:36383800-36387600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:36383800-36388000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:36383800-36389000	Weak transcription	Ovary	ovary
37	chr11:36384000-36385600	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr11:36384000-36386000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:36384000-36386800	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr11:36384200-36385800	Enhancers	HUVEC	blood vessel
41	chr11:36384200-36386400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:36384200-36386400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:36384400-36385400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr11:36384400-36385400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
45	chr11:36384400-36385400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:36384400-36385400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:36384400-36385400	Enhancers	Lung	lung
48	chr11:36384400-36385600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:36384400-36385600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr11:36384400-36385600	Enhancers	Sigmoid Colon	Sigmoid Colon

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