Variant report

Variant	rs58568327
Chromosome Location	chr11:36380630-36380631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34926486..34928206-chr11:36379103..36382037,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10501149	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17615296	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7925585	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36374800-36382000	Weak transcription	Brain Anterior Caudate	brain
4	chr11:36376000-36381600	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr11:36376000-36381600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr11:36376200-36380800	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr11:36376400-36381000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr11:36376400-36382000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:36376800-36381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr11:36376800-36382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr11:36376800-36382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:36376800-36382000	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:36376800-36382200	Weak transcription	NHDF-Ad	bronchial
14	chr11:36376800-36382400	Weak transcription	Hela-S3	cervix
15	chr11:36376800-36383200	Weak transcription	HSMMtube	muscle
16	chr11:36377000-36381800	Weak transcription	NHEK	skin
17	chr11:36377000-36382000	Weak transcription	HMEC	breast
18	chr11:36377000-36382200	Weak transcription	HSMM	muscle
19	chr11:36377000-36382400	Weak transcription	NH-A	brain
20	chr11:36377200-36382000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr11:36377400-36380800	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr11:36377800-36381800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:36378000-36383400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:36378200-36382000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr11:36378200-36384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:36378400-36382200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr11:36378400-36382200	Weak transcription	Adipose Nuclei	Adipose
29	chr11:36378400-36383600	Weak transcription	Spleen	Spleen
30	chr11:36378600-36381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr11:36378600-36382000	Weak transcription	Fetal Intestine Small	intestine
32	chr11:36378600-36382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:36378600-36382400	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:36378800-36382000	Weak transcription	Fetal Intestine Large	intestine
35	chr11:36378800-36382200	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr11:36379200-36382000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr11:36379200-36382000	Weak transcription	Colonic Mucosa	Colon
38	chr11:36379400-36381800	Weak transcription	Brain Substantia Nigra	brain
39	chr11:36379600-36381200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:36379600-36381400	Weak transcription	GM12878-XiMat	blood
41	chr11:36379800-36381600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr11:36379800-36381600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
43	chr11:36379800-36381600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:36379800-36381600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:36380600-36381000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:36380600-36381800	Enhancers	Primary T helper naive cells from peripheral blood	blood
47	chr11:36380600-36381800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr11:36380600-36382000	Weak transcription	Fetal Thymus	thymus
49	chr11:36380600-36382600	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr11:36380600-36385200	Enhancers	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links