Variant report

Variant	rs17615587
Chromosome Location	chr11:36406792-36406793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr11:36406652-36407150	GM12878	blood:	n/a	n/a
2	NR2F2	chr11:36406617-36407230	MCF-7	breast:	n/a	n/a
3	GATA3	chr11:36406579-36407354	MCF-7	breast:	n/a	n/a
4	SIN3AK20	chr11:36406464-36407276	MCF-7	breast:	n/a	n/a
5	CREB1	chr11:36406753-36407127	GM12878	blood:	n/a	n/a
6	GATA3	chr11:36406622-36407277	MCF-7	breast:	n/a	n/a
7	POLR2A	chr11:36406556-36407040	SK-N-MC	brain:	n/a	n/a
8	CREB1	chr11:36406667-36407219	GM12878	blood:	n/a	n/a
9	NR2F2	chr11:36406626-36407246	MCF-7	breast:	n/a	chr11:36407219-36407234
10	EBF1	chr11:36406691-36407098	GM12878	blood:	n/a	n/a
11	RUNX3	chr11:36406740-36407103	GM12878	blood:	n/a	n/a
12	EP300	chr11:36406583-36407078	Hela-S3	cervix:	n/a	chr11:36406994-36407002
13	RELA	chr11:36406699-36407209	GM12878	blood:	n/a	n/a
14	HDAC2	chr11:36406585-36407161	MCF-7	breast:	n/a	chr11:36406881-36406890
15	FOS	chr11:36406764-36407004	MCF10A-Er-Src	breast:	n/a	n/a
16	POLR2A	chr11:36406538-36406978	MCF10A-Er-Src	breast:	n/a	n/a
17	EP300	chr11:36406784-36407098	GM12878	blood:	n/a	chr11:36406994-36407002

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36400346..36402601-chr11:36405590..36407328,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255186	TF binding region

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs5030488	1.00[ASN][1000 genomes]
rs5030489	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36399800-36406800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:36399800-36411800	Weak transcription	HSMM	muscle
3	chr11:36400000-36408000	Weak transcription	Thymus	Thymus
4	chr11:36400000-36409400	Weak transcription	Adipose Nuclei	Adipose
5	chr11:36400000-36409800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:36400000-36412400	Weak transcription	Osteobl	bone
7	chr11:36400000-36415600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:36400000-36425200	Weak transcription	Fetal Kidney	kidney
9	chr11:36400000-36425600	Weak transcription	HUVEC	blood vessel
10	chr11:36400200-36406800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36400200-36475400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr11:36400600-36407200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:36400600-36431200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:36400800-36443600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:36401000-36420200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:36401200-36408000	Weak transcription	Liver	Liver
17	chr11:36401400-36409000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:36401600-36406800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:36401800-36409400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr11:36402000-36410000	Weak transcription	Placenta	Placenta
21	chr11:36402000-36424200	Weak transcription	Left Ventricle	heart
22	chr11:36402000-36431800	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:36403000-36407600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:36403000-36409800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr11:36403000-36415400	Weak transcription	NHEK	skin
26	chr11:36403000-36417800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:36403000-36438200	Weak transcription	Ovary	ovary
28	chr11:36403200-36406800	Weak transcription	Small Intestine	intestine
29	chr11:36403200-36409200	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr11:36403800-36407600	Enhancers	Brain Substantia Nigra	brain
31	chr11:36404200-36415400	Weak transcription	Colonic Mucosa	Colon
32	chr11:36404400-36406800	Weak transcription	NH-A	brain
33	chr11:36404400-36407400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr11:36404400-36408000	Weak transcription	Spleen	Spleen
35	chr11:36404400-36409000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr11:36404400-36409200	Weak transcription	Brain Anterior Caudate	brain
37	chr11:36404400-36409400	Weak transcription	Primary hematopoietic stem cells	blood
38	chr11:36404400-36409800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:36404600-36407200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:36404600-36415400	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr11:36405000-36407600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:36405000-36408000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
43	chr11:36405000-36417800	Weak transcription	HMEC	breast
44	chr11:36405200-36406800	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr11:36405200-36406800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:36405200-36406800	Weak transcription	Fetal Intestine Small	intestine
47	chr11:36405200-36407200	Weak transcription	Fetal Intestine Large	intestine
48	chr11:36405600-36407000	Genic enhancers	Rectal Mucosa Donor 29	rectum
49	chr11:36405800-36407600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr11:36405800-36407800	Enhancers	Primary T helper naive cells from peripheral blood	blood

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