Variant report

Variant	rs5030489
Chromosome Location	chr11:36534344-36534345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12419483	1.00[ASN][1000 genomes]
rs17615587	1.00[ASN][1000 genomes]
rs2056094	0.82[EUR][1000 genomes]
rs4151000	0.82[EUR][1000 genomes]
rs5030488	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs58344758	1.00[ASN][1000 genomes]
rs7112274	1.00[ASN][1000 genomes]
rs7113687	1.00[ASN][1000 genomes]
rs7115697	1.00[ASN][1000 genomes]
rs7130556	1.00[ASN][1000 genomes]
rs73439954	1.00[ASN][1000 genomes]
rs73439965	1.00[ASN][1000 genomes]
rs73439971	1.00[ASN][1000 genomes]
rs73439975	1.00[ASN][1000 genomes]
rs73439987	1.00[ASN][1000 genomes]
rs73439990	1.00[ASN][1000 genomes]
rs73453401	0.81[EUR][1000 genomes]
rs872053	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36532600-36534600	Enhancers	Fetal Intestine Large	intestine
2	chr11:36532600-36534800	Enhancers	Fetal Intestine Small	intestine
3	chr11:36532600-36535400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:36534000-36535200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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