Variant report

Variant	rs17617913
Chromosome Location	chr2:185638875-185638876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10497658	1.00[YRI][hapmap]
rs12469299	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs12990519	1.00[YRI][hapmap]
rs13018902	1.00[YRI][hapmap]
rs17617267	1.00[YRI][hapmap]
rs17617356	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs17617408	0.89[CEU][hapmap]
rs17617468	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap]
rs2035320	0.80[CEU][hapmap]
rs2369593	0.80[CEU][hapmap]
rs6434092	0.80[CEU][hapmap]
rs6742182	0.89[CEU][hapmap];0.84[JPT][hapmap]
rs7581009	0.80[CEU][hapmap]
rs899846	0.80[CEU][hapmap]
rs994653	0.89[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532412	chr2:185347334-186108701	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv834484	chr2:185550006-185762728	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv962122	chr2:185634595-185641317	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17617913	PDE1A	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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