Variant report

Variant	rs17625789
Chromosome Location	chr9:110544732-110544733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr9:110544726-110545413	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110531111..110532884-chr9:110541979..110544969,2	K562	blood:

Variant related genes	Relation type
ENSG00000214645	TF binding region

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12554139	0.99[ASN][1000 genomes]
rs17625807	0.84[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3739694	0.99[ASN][1000 genomes]
rs41506947	0.80[YRI][hapmap]
rs56114293	0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs56677801	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59139488	1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs59322453	0.88[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs60528210	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs73518959	0.92[AMR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv508561	chr9:110506336-110545367	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv6657	chr9:110533206-110545471	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110536600-110546600	Weak transcription	Spleen	Spleen
2	chr9:110541200-110544800	Weak transcription	HSMM	muscle
3	chr9:110541400-110547400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110542000-110544800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr9:110542000-110547400	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr9:110543600-110547800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:110544200-110545200	Enhancers	HSMMtube	muscle
8	chr9:110544200-110546000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr9:110544200-110548000	Enhancers	Fetal Muscle Leg	muscle
10	chr9:110544200-110549200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:110544600-110545000	Enhancers	Primary B cells from cord blood	blood
12	chr9:110544600-110545000	Flanking Active TSS	NHDF-Ad	bronchial
13	chr9:110544600-110545200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:110544600-110545200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:110544600-110545200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr9:110544600-110545200	Enhancers	Osteobl	bone
17	chr9:110544600-110545400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:110544600-110545400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:110544600-110545800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:110544600-110546000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:110544600-110546200	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links