Variant report

Variant	rs17626555
Chromosome Location	chr1:216836535-216836536
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10495032	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572596	1.00[CHB][hapmap]
rs11572687	1.00[CHB][hapmap]
rs11572709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11572813	1.00[JPT][hapmap]
rs12097500	1.00[JPT][hapmap]
rs17043533	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs17626048	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17626398	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17627924	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17673189	0.83[EUR][1000 genomes]
rs3738492	1.00[JPT][hapmap]
rs3738493	1.00[JPT][hapmap]
rs6694260	1.00[JPT][hapmap]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216787400-216853800	Weak transcription	Pancreas	Pancrea
2	chr1:216814000-216856200	Weak transcription	Psoas Muscle	Psoas
3	chr1:216820400-216855400	Weak transcription	Fetal Heart	heart
4	chr1:216826000-216856200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:216833800-216838200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr1:216834200-216844000	Weak transcription	Left Ventricle	heart
7	chr1:216834400-216860400	Weak transcription	Right Ventricle	heart
8	chr1:216835800-216836800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:216835800-216839600	Weak transcription	Fetal Intestine Large	intestine
10	chr1:216836000-216836600	Enhancers	Placenta	Placenta
11	chr1:216836000-216839400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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