Variant report

Variant	rs3738492
Chromosome Location	chr1:216678937-216678938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11117605	1.00[AMR][1000 genomes]
rs11572813	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12058696	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12080785	1.00[CEU][hapmap]
rs12088229	1.00[AMR][1000 genomes]
rs12097500	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17042784	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17626555	1.00[JPT][hapmap]
rs3738493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6694260	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7525087	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs7527302	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1011849	chr1:216668381-216701163	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216672200-216699600	Weak transcription	Gastric	stomach
2	chr1:216673200-216704600	Weak transcription	Pancreas	Pancrea
3	chr1:216674200-216681800	Weak transcription	Fetal Intestine Large	intestine
4	chr1:216674600-216702000	Weak transcription	Fetal Intestine Small	intestine
5	chr1:216676200-216680200	Weak transcription	Left Ventricle	heart
6	chr1:216676400-216680200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr1:216677400-216679600	Weak transcription	Fetal Muscle Leg	muscle
8	chr1:216677400-216679800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:216677400-216682000	Weak transcription	Fetal Heart	heart
10	chr1:216678600-216680600	Strong transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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