Variant report

Variant	rs17627382
Chromosome Location	chr2:7341809-7341810
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17627644	0.86[ASN][1000 genomes]
rs17628027	0.86[ASN][1000 genomes]
rs17628092	0.86[ASN][1000 genomes]
rs17678724	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17679036	0.86[ASN][1000 genomes]
rs35238941	0.86[ASN][1000 genomes]
rs55680060	0.86[ASN][1000 genomes]
rs55935532	0.86[ASN][1000 genomes]
rs56007885	0.86[ASN][1000 genomes]
rs56344406	0.86[ASN][1000 genomes]
rs62104661	0.86[ASN][1000 genomes]
rs62104669	0.86[ASN][1000 genomes]
rs62106503	1.00[ASN][1000 genomes]
rs62106508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72770008	0.86[ASN][1000 genomes]
rs72770026	0.86[ASN][1000 genomes]
rs7557365	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1000136	chr2:7337270-7379211	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv833337	chr2:7337273-7521146	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7341200-7344400	Enhancers	Fetal Brain Male	brain
2	chr2:7341600-7343200	Enhancers	Brain Germinal Matrix	brain
3	chr2:7341800-7342000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:7341800-7343000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:7341800-7343200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr2:7341800-7343200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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