Variant report

Variant	rs62106503
Chromosome Location	chr2:7333770-7333771
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs17627382	1.00[ASN][1000 genomes]
rs17627644	0.86[ASN][1000 genomes]
rs17628027	0.86[ASN][1000 genomes]
rs17628092	0.86[ASN][1000 genomes]
rs17678724	1.00[ASN][1000 genomes]
rs17679036	0.86[ASN][1000 genomes]
rs35238941	0.86[ASN][1000 genomes]
rs55680060	0.86[ASN][1000 genomes]
rs55935532	0.86[ASN][1000 genomes]
rs56007885	0.86[ASN][1000 genomes]
rs56344406	0.86[ASN][1000 genomes]
rs62104661	0.86[ASN][1000 genomes]
rs62104669	0.86[ASN][1000 genomes]
rs62106491	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62106498	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62106499	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62106500	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62106508	1.00[ASN][1000 genomes]
rs6431857	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6431858	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6734716	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6737770	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72770008	0.86[ASN][1000 genomes]
rs72770026	0.86[ASN][1000 genomes]
rs7557365	0.86[ASN][1000 genomes]
rs7563519	0.87[EUR][1000 genomes]
rs7566911	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7567132	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7567232	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7577464	0.84[EUR][1000 genomes]
rs7580185	0.83[EUR][1000 genomes]
rs7580404	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7580735	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7581049	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7592632	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7592975	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7596634	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7596738	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs873213	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs874633	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs874634	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs876223	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915888	chr2:7197783-7461967	Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:7331000-7341800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:7332800-7335400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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