Variant report

Variant	rs17631553
Chromosome Location	chr15:53966638-53966639
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:53958809..53961070-chr15:53966400..53969207,2	MCF-7	breast:

Extended variants
information (count: 81 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs12439465	0.82[EUR][1000 genomes]
rs12439520	0.84[EUR][1000 genomes]
rs12439540	0.84[EUR][1000 genomes]
rs12439608	0.84[EUR][1000 genomes]
rs12439700	0.84[EUR][1000 genomes]
rs12441277	0.84[EUR][1000 genomes]
rs12442549	0.84[EUR][1000 genomes]
rs16966254	0.84[EUR][1000 genomes]
rs16966257	0.84[EUR][1000 genomes]
rs16966258	0.84[EUR][1000 genomes]
rs16966261	0.84[EUR][1000 genomes]
rs16966270	0.84[EUR][1000 genomes]
rs16966272	0.84[EUR][1000 genomes]
rs16966273	0.84[EUR][1000 genomes]
rs16966274	0.84[EUR][1000 genomes]
rs16966276	0.84[EUR][1000 genomes]
rs16966278	0.84[EUR][1000 genomes]
rs16966280	0.84[EUR][1000 genomes]
rs16966282	0.84[EUR][1000 genomes]
rs16966284	0.84[EUR][1000 genomes]
rs16966301	0.84[EUR][1000 genomes]
rs16966302	0.84[EUR][1000 genomes]
rs16966304	0.84[EUR][1000 genomes]
rs16966308	0.84[EUR][1000 genomes]
rs1906396	0.84[EUR][1000 genomes]
rs1906398	0.84[EUR][1000 genomes]
rs1906399	0.84[EUR][1000 genomes]
rs1906442	0.84[EUR][1000 genomes]
rs35968624	0.84[EUR][1000 genomes]
rs55799724	0.84[EUR][1000 genomes]
rs56007818	0.84[EUR][1000 genomes]
rs56276502	0.84[EUR][1000 genomes]
rs56771214	0.84[EUR][1000 genomes]
rs58124844	0.84[EUR][1000 genomes]
rs59074347	0.84[EUR][1000 genomes]
rs59125438	0.80[EUR][1000 genomes]
rs59287715	0.84[EUR][1000 genomes]
rs59627084	0.84[EUR][1000 genomes]
rs60027343	0.84[EUR][1000 genomes]
rs60909239	0.84[EUR][1000 genomes]
rs61301076	0.84[EUR][1000 genomes]
rs61554251	0.84[EUR][1000 genomes]
rs7164313	0.84[EUR][1000 genomes]
rs7165282	0.84[EUR][1000 genomes]
rs7165440	0.84[EUR][1000 genomes]
rs7170810	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7171176	0.84[EUR][1000 genomes]
rs7171226	0.84[EUR][1000 genomes]
rs7171619	0.84[EUR][1000 genomes]
rs7171820	0.84[EUR][1000 genomes]
rs7171915	0.84[EUR][1000 genomes]
rs7172085	0.84[EUR][1000 genomes]
rs7172090	0.84[EUR][1000 genomes]
rs7172762	0.84[EUR][1000 genomes]
rs7173966	0.84[EUR][1000 genomes]
rs73408216	0.84[EUR][1000 genomes]
rs73408217	0.84[EUR][1000 genomes]
rs73408222	0.84[EUR][1000 genomes]
rs73408230	0.84[EUR][1000 genomes]
rs73408236	0.84[EUR][1000 genomes]
rs73408239	0.84[EUR][1000 genomes]
rs74015825	0.84[EUR][1000 genomes]
rs74018056	0.84[EUR][1000 genomes]
rs74018057	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv904224	chr15:53668018-54210677	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv9267	chr15:53821005-54132612	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv569435	chr15:53845097-53966805	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv934282	chr15:53872148-53989432	Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	nsv527474	chr15:53874591-53991833	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv904226	chr15:53883244-54458310	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv457144	chr15:53890362-54455757	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv569440	chr15:53890362-54455757	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv569441	chr15:53890362-54456754	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv457145	chr15:53890393-54456754	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	nsv569442	chr15:53890393-54456754	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
15	nsv1043995	chr15:53907679-53968209	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
16	nsv833010	chr15:53935652-54099849	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
17	nsv569443	chr15:53936907-53972798	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17631553	SUCNR1	trans	lymphoblastoid	seeQTL
rs17631553	MAEL	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53951600-53973000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:53957800-53972800	Weak transcription	Liver	Liver
3	chr15:53959600-53986200	Weak transcription	Pancreas	Pancrea
4	chr15:53964000-53968600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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