Variant report

Variant	rs17631764
Chromosome Location	chr8:115229697-115229698
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10104054	0.83[ASN][1000 genomes]
rs10107004	0.83[ASN][1000 genomes]
rs10112505	0.83[ASN][1000 genomes]
rs10113533	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10156269	0.83[ASN][1000 genomes]
rs10156270	0.83[ASN][1000 genomes]
rs10505212	0.83[ASN][1000 genomes]
rs1473984	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17631819	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17633801	0.83[ASN][1000 genomes]
rs17706095	0.83[ASN][1000 genomes]
rs17706527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17706574	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17712380	0.83[ASN][1000 genomes]
rs2176118	0.83[ASN][1000 genomes]
rs28647198	0.83[ASN][1000 genomes]
rs28655722	0.83[ASN][1000 genomes]
rs28762128	0.83[ASN][1000 genomes]
rs28883315	0.83[ASN][1000 genomes]
rs4358830	0.83[ASN][1000 genomes]
rs4876564	0.83[ASN][1000 genomes]
rs62540560	0.83[ASN][1000 genomes]
rs62540566	0.83[ASN][1000 genomes]
rs62540567	0.83[ASN][1000 genomes]
rs62540572	0.83[ASN][1000 genomes]
rs62540573	0.83[ASN][1000 genomes]
rs62540574	0.83[ASN][1000 genomes]
rs62540585	0.83[ASN][1000 genomes]
rs62540586	0.83[ASN][1000 genomes]
rs62540587	0.83[ASN][1000 genomes]
rs62540588	0.83[ASN][1000 genomes]
rs62542889	0.83[ASN][1000 genomes]
rs62542890	1.00[ASN][1000 genomes]
rs62544298	0.92[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs62544300	0.96[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72679654	0.83[ASN][1000 genomes]
rs72679669	0.83[ASN][1000 genomes]
rs72679700	1.00[ASN][1000 genomes]
rs72679701	1.00[ASN][1000 genomes]
rs72679702	1.00[ASN][1000 genomes]
rs72682006	0.83[ASN][1000 genomes]
rs72682010	1.00[ASN][1000 genomes]
rs72682011	0.83[ASN][1000 genomes]
rs72682012	1.00[ASN][1000 genomes]
rs72682015	1.00[ASN][1000 genomes]
rs72682019	1.00[ASN][1000 genomes]
rs72682020	1.00[ASN][1000 genomes]
rs72682026	1.00[ASN][1000 genomes]
rs72682027	1.00[ASN][1000 genomes]
rs72682029	1.00[ASN][1000 genomes]
rs72682037	1.00[ASN][1000 genomes]
rs72682043	1.00[ASN][1000 genomes]
rs72682047	1.00[ASN][1000 genomes]
rs72684126	1.00[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs72684142	0.83[ASN][1000 genomes]
rs72684148	0.83[ASN][1000 genomes]
rs72684183	0.83[ASN][1000 genomes]
rs7814698	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818650	chr8:114574863-115477600	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2758168	chr8:114575703-115321957	Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv2759636	chr8:114575703-115321957	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891340	chr8:114828429-115445405	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv891351	chr8:115162781-115247555	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv891352	chr8:115162781-115536093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1818970	chr8:115184664-115404627	Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1030462	chr8:115227867-115250916	Weak transcription Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv465776	chr8:115227867-115280841	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv611973	chr8:115227867-115280841	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:115229600-115230800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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