Variant report

Variant	rs17631953
Chromosome Location	chr2:67097550-67097551
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67090168..67092771-chr2:67095579..67098311,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12467586	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1468817	1.00[LWK][hapmap]
rs17587626	0.98[ASN][1000 genomes]
rs2861182	0.83[EUR][1000 genomes]
rs36122997	0.98[ASN][1000 genomes]
rs3732047	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6731610	0.98[ASN][1000 genomes]
rs72809732	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7591850	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.98[ASN][1000 genomes]
rs868373	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67089400-67102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:67089600-67098000	Enhancers	NHLF	lung
3	chr2:67089600-67102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr2:67090600-67098000	Enhancers	NHDF-Ad	bronchial
5	chr2:67091800-67098000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:67093000-67097800	Enhancers	HSMM	muscle
7	chr2:67093000-67098000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr2:67093600-67098000	Enhancers	NH-A	brain
9	chr2:67094400-67099200	Weak transcription	Fetal Kidney	kidney
10	chr2:67094800-67099400	Weak transcription	Fetal Stomach	stomach
11	chr2:67095200-67097600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:67095400-67098600	Weak transcription	Fetal Lung	lung
13	chr2:67095600-67099600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr2:67095600-67100200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:67096400-67099200	Weak transcription	HUVEC	blood vessel
16	chr2:67096600-67099200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr2:67096600-67099600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr2:67096600-67100000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr2:67096600-67100400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr2:67096800-67099000	Weak transcription	Osteobl	bone
21	chr2:67097000-67098800	Weak transcription	Fetal Heart	heart
22	chr2:67097000-67100200	Weak transcription	HSMMtube	muscle
23	chr2:67097000-67100800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr2:67097000-67103600	Enhancers	Colon Smooth Muscle	Colon
25	chr2:67097400-67099400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links