Variant report

Variant	rs17631961
Chromosome Location	chr4:26994999-26995000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10489056	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs17570273	1.00[ASN][1000 genomes]
rs36053391	1.00[ASN][1000 genomes]
rs61075882	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654663	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7670910	1.00[ASN][1000 genomes]
rs7679544	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7689377	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26975800-27003200	Weak transcription	Aorta	Aorta
2	chr4:26978400-27019200	Weak transcription	Fetal Intestine Small	intestine
3	chr4:26980400-27019400	Weak transcription	Left Ventricle	heart
4	chr4:26985400-27019400	Weak transcription	Esophagus	oesophagus
5	chr4:26988400-26998000	Weak transcription	Dnd41	blood
6	chr4:26989000-27010000	Weak transcription	Thymus	Thymus
7	chr4:26989000-27010400	Weak transcription	Fetal Thymus	thymus
8	chr4:26989400-26996000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr4:26989400-26997000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr4:26989400-27024800	Weak transcription	Psoas Muscle	Psoas
11	chr4:26989600-27027000	Weak transcription	HepG2	liver
12	chr4:26993200-26995000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr4:26993200-26996800	Enhancers	Fetal Lung	lung
14	chr4:26993200-26997000	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr4:26993200-26997200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr4:26993400-26995200	Weak transcription	Brain Germinal Matrix	brain
17	chr4:26993400-26995400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr4:26993400-26996000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr4:26993400-26996200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr4:26993400-26996800	Enhancers	Colon Smooth Muscle	Colon
21	chr4:26993400-26997000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:26993400-26997000	Enhancers	Brain Hippocampus Middle	brain
23	chr4:26993400-26997200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr4:26993400-26997200	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr4:26993400-26997200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr4:26993400-26997400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr4:26993400-26997800	Enhancers	Primary T cells from cord blood	blood
28	chr4:26993800-26996600	Enhancers	Brain Anterior Caudate	brain
29	chr4:26994000-26995000	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr4:26994000-26995000	Enhancers	Fetal Muscle Leg	muscle
31	chr4:26994000-26995200	Flanking Active TSS	Primary B cells from peripheral blood	blood
32	chr4:26994000-26995400	Enhancers	Muscle Satellite Cultured Cells	--
33	chr4:26994000-26995400	Enhancers	Rectal Smooth Muscle	rectum
34	chr4:26994000-26995600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:26994000-26995600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:26994000-26995600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr4:26994000-26995600	Enhancers	Osteobl	bone
38	chr4:26994000-26996400	Enhancers	Brain Angular Gyrus	brain
39	chr4:26994000-26996800	Enhancers	Brain Substantia Nigra	brain
40	chr4:26994000-26997200	Enhancers	Primary T helper naive cells from peripheral blood	blood
41	chr4:26994200-26995000	Enhancers	K562	blood
42	chr4:26994200-26995200	Enhancers	HMEC	breast
43	chr4:26994200-26995600	Enhancers	NH-A	brain
44	chr4:26994200-26996600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:26994200-26996600	Enhancers	HSMMtube	muscle
46	chr4:26994200-26996800	Enhancers	Brain Cingulate Gyrus	brain
47	chr4:26994200-26996800	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr4:26994200-27004600	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr4:26994400-26995000	Enhancers	Liver	Liver
50	chr4:26994400-26995000	Enhancers	Fetal Kidney	kidney

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