Variant report

Variant	rs7689377
Chromosome Location	chr4:26976432-26976433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10489056	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878680	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17570273	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17631961	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2110223	0.85[EUR][1000 genomes]
rs36053391	1.00[ASN][1000 genomes]
rs61075882	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6853163	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7654663	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7670910	1.00[ASN][1000 genomes]
rs7679544	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7700093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv461312	chr4:26844674-27078376	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv593872	chr4:26844674-27078376	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1000568	chr4:26886920-27049554	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26923200-26977200	Weak transcription	Thymus	Thymus
2	chr4:26950000-26980200	Weak transcription	Spleen	Spleen
3	chr4:26950200-26979400	Weak transcription	Ovary	ovary
4	chr4:26959200-26977600	Weak transcription	Fetal Thymus	thymus
5	chr4:26961000-26977200	Weak transcription	Fetal Intestine Small	intestine
6	chr4:26961600-26977200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:26961800-26980200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr4:26961800-26994000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr4:26963600-26994200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:26964200-26977200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:26966600-26986400	Weak transcription	HSMM	muscle
12	chr4:26966600-26989000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:26966600-26994600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr4:26966800-26977200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr4:26966800-26979200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:26966800-26979400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr4:26966800-26985200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:26966800-26986400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:26967000-26977200	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:26967000-26980000	Weak transcription	GM12878-XiMat	blood
21	chr4:26967200-26977200	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr4:26967600-26986400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:26968000-26976600	Weak transcription	Primary T cells from cord blood	blood
24	chr4:26968000-26977200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:26969400-26977200	Weak transcription	Primary B cells from peripheral blood	blood
26	chr4:26969800-26979400	Weak transcription	Pancreas	Pancrea
27	chr4:26969800-26980000	Weak transcription	Primary B cells from cord blood	blood
28	chr4:26974400-26977600	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:26975000-26977600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr4:26975400-26977200	Weak transcription	Fetal Stomach	stomach
31	chr4:26975600-26977200	Weak transcription	Fetal Muscle Trunk	muscle
32	chr4:26975800-26976600	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr4:26975800-26977200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:26975800-26979200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr4:26975800-26980400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr4:26975800-27003200	Weak transcription	Aorta	Aorta
37	chr4:26976000-26977200	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr4:26976200-26978600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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