Variant report

Variant	rs17633078
Chromosome Location	chr13:30830634-30830635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30830170..30831527-chr13:30908713..30909751,4	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11618973	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17633024	0.86[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17689523	0.86[JPT][hapmap];0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs2277450	0.86[JPT][hapmap];0.86[LWK][hapmap];0.93[MKK][hapmap];0.80[YRI][hapmap]
rs3213617	1.00[ASW][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs73163460	0.84[EUR][1000 genomes]
rs73163464	0.86[EUR][1000 genomes]
rs73163467	0.81[AFR][1000 genomes]
rs73163468	0.81[AFR][1000 genomes]
rs73163474	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
4	chr13:30799400-30831600	Weak transcription	Right Ventricle	heart
5	chr13:30799600-30845200	Weak transcription	HMEC	breast
6	chr13:30803000-30831400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:30803600-30831400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr13:30804400-30831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:30805600-30831600	Weak transcription	Left Ventricle	heart
10	chr13:30805600-30831600	Weak transcription	Stomach Smooth Muscle	stomach
11	chr13:30805600-30841800	Weak transcription	Ovary	ovary
12	chr13:30805600-30853200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:30810000-30831600	Weak transcription	NHLF	lung
14	chr13:30810600-30849200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr13:30813000-30849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:30814800-30831400	Weak transcription	NH-A	brain
17	chr13:30820600-30831800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr13:30820600-30831800	Weak transcription	HSMMtube	muscle
19	chr13:30822400-30833600	Weak transcription	K562	blood
20	chr13:30822800-30834000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr13:30823400-30831000	Weak transcription	Fetal Stomach	stomach
22	chr13:30823400-30831600	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr13:30823600-30831200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr13:30823600-30831600	Weak transcription	Fetal Brain Male	brain
25	chr13:30823600-30849200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:30823600-30849200	Weak transcription	HSMM	muscle
27	chr13:30823800-30833800	Weak transcription	NHEK	skin
28	chr13:30823800-30849200	Weak transcription	Fetal Brain Female	brain
29	chr13:30824000-30831400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr13:30824000-30831400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr13:30824000-30831400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr13:30824000-30831600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr13:30824000-30831600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr13:30824000-30831600	Weak transcription	Adipose Nuclei	Adipose
35	chr13:30824000-30831600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr13:30824000-30832000	Weak transcription	Fetal Kidney	kidney
37	chr13:30824000-30832000	Weak transcription	Osteobl	bone
38	chr13:30824000-30833400	Weak transcription	Monocytes-CD14+_RO01746	blood
39	chr13:30824000-30845200	Weak transcription	Thymus	Thymus
40	chr13:30824000-30848800	Weak transcription	Fetal Muscle Leg	muscle
41	chr13:30824200-30849200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr13:30824400-30830800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr13:30824400-30831000	Weak transcription	Colon Smooth Muscle	Colon
44	chr13:30824400-30831600	Weak transcription	Primary B cells from cord blood	blood
45	chr13:30824400-30831800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr13:30824400-30849200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr13:30824600-30833400	Weak transcription	Pancreas	Pancrea
48	chr13:30824800-30830800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:30824800-30832800	Strong transcription	Dnd41	blood
50	chr13:30825000-30831400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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