Variant report

Variant	rs17635597
Chromosome Location	chr3:177421455-177421456
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:177412767..177415044-chr3:177421223..177423851,2	MCF-7	breast:
2	chr3:177420301..177421877-chr3:177520246..177522505,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10513747	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10513748	0.84[ASN][1000 genomes]
rs10513749	0.84[CHB][hapmap]
rs10513750	0.84[CHB][hapmap]
rs10936953	1.00[ASW][hapmap];0.94[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10936954	0.84[ASN][1000 genomes]
rs11915692	0.85[ASN][1000 genomes]
rs12487312	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12487458	0.84[CHB][hapmap]
rs12489304	0.84[CHB][hapmap]
rs12489969	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12496321	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13059117	0.84[ASN][1000 genomes]
rs13059514	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];0.93[JPT][hapmap];0.85[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13064192	0.94[ASN][1000 genomes]
rs13071785	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13074455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13082519	0.84[CHB][hapmap]
rs13097562	0.95[ASN][1000 genomes]
rs13097723	0.82[ASN][1000 genomes]
rs13098037	0.95[ASN][1000 genomes]
rs1499809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1499810	0.83[ASN][1000 genomes]
rs1499811	0.97[ASN][1000 genomes]
rs1500047	0.86[ASN][1000 genomes]
rs1500048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1604032	0.84[ASN][1000 genomes]
rs17635512	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1846628	0.86[ASN][1000 genomes]
rs2062499	0.84[CHB][hapmap]
rs2062500	0.93[CHB][hapmap];0.92[JPT][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28700961	0.80[ASN][1000 genomes]
rs28711160	0.80[ASN][1000 genomes]
rs34066617	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34188001	0.86[ASN][1000 genomes]
rs34347103	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34407557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34491022	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34557886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34638059	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34763113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34992356	0.84[ASN][1000 genomes]
rs35110045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35468531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35610650	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35652846	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35830472	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35847814	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36055300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4857725	0.82[ASN][1000 genomes]
rs4857726	0.82[ASN][1000 genomes]
rs56005554	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61541774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6443481	0.84[ASN][1000 genomes]
rs6443482	0.86[ASN][1000 genomes]
rs66636257	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67189039	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6765836	0.82[ASN][1000 genomes]
rs6772134	0.80[ASN][1000 genomes]
rs6779492	0.84[ASN][1000 genomes]
rs67797381	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793629	0.84[CHB][hapmap]
rs6793647	0.80[ASN][1000 genomes]
rs6798785	0.84[ASN][1000 genomes]
rs6803889	0.84[ASN][1000 genomes]
rs68151580	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71308158	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7615900	0.84[ASN][1000 genomes]
rs7639373	0.84[CHB][hapmap]
rs7644248	0.80[ASN][1000 genomes]
rs7646117	0.84[ASN][1000 genomes]
rs7652174	0.84[ASN][1000 genomes]
rs937507	0.84[ASN][1000 genomes]
rs937561	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv998537	chr3:177403421-177425648	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1009087	chr3:177405231-177422275	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1013114	chr3:177421455-177443968	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177398800-177421600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:177412000-177422200	Weak transcription	Fetal Heart	heart
3	chr3:177412400-177423800	Weak transcription	Thymus	Thymus
4	chr3:177412600-177424200	Weak transcription	Fetal Brain Male	brain
5	chr3:177412800-177424200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:177413600-177432000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr3:177419000-177423800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:177420600-177421600	Weak transcription	Psoas Muscle	Psoas
9	chr3:177421000-177423600	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:177421200-177422200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:177421200-177422400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:177421400-177422000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr3:177421400-177422200	Enhancers	HMEC	breast
14	chr3:177421400-177422200	Enhancers	HUVEC	blood vessel

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