Variant report

Variant	rs10513748
Chromosome Location	chr3:177412574-177412575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10513747	0.82[ASN][1000 genomes]
rs10513749	0.94[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs10513750	0.94[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs10936953	0.94[CHB][hapmap]
rs10936954	1.00[ASN][1000 genomes]
rs12487458	0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12489304	0.84[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs12490852	0.83[ASN][1000 genomes]
rs12496321	0.86[ASN][1000 genomes]
rs13059117	1.00[ASN][1000 genomes]
rs13059514	0.94[CHB][hapmap]
rs13060224	0.89[ASN][1000 genomes]
rs13060502	0.89[ASN][1000 genomes]
rs13074455	0.84[ASN][1000 genomes]
rs13082519	0.94[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs13097723	0.94[ASN][1000 genomes]
rs13340118	0.89[ASN][1000 genomes]
rs13340167	0.89[ASN][1000 genomes]
rs13340172	0.89[ASN][1000 genomes]
rs1499809	0.86[ASN][1000 genomes]
rs1499810	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1499811	0.81[ASN][1000 genomes]
rs1500047	0.98[ASN][1000 genomes]
rs1500048	0.84[ASN][1000 genomes]
rs1604032	1.00[ASN][1000 genomes]
rs17635512	0.86[ASN][1000 genomes]
rs17635597	0.84[ASN][1000 genomes]
rs1846628	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2062499	0.94[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs2062500	0.94[CHB][hapmap]
rs28700961	0.92[ASN][1000 genomes]
rs28711160	0.90[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs33964414	0.88[ASN][1000 genomes]
rs34066617	0.84[ASN][1000 genomes]
rs34188001	0.98[ASN][1000 genomes]
rs34347103	0.84[ASN][1000 genomes]
rs34407557	0.86[ASN][1000 genomes]
rs34557886	0.86[ASN][1000 genomes]
rs34638059	0.86[ASN][1000 genomes]
rs34763113	0.86[ASN][1000 genomes]
rs34992356	1.00[ASN][1000 genomes]
rs35110045	0.86[ASN][1000 genomes]
rs35468531	0.84[ASN][1000 genomes]
rs35610650	0.86[ASN][1000 genomes]
rs35652846	0.86[ASN][1000 genomes]
rs35791913	0.88[ASN][1000 genomes]
rs35830472	0.84[ASN][1000 genomes]
rs35868955	0.88[ASN][1000 genomes]
rs36055300	0.86[ASN][1000 genomes]
rs4857725	0.94[ASN][1000 genomes]
rs4857726	0.89[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs57405296	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61541774	0.86[ASN][1000 genomes]
rs62283347	0.92[ASN][1000 genomes]
rs6443481	1.00[ASN][1000 genomes]
rs6443482	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs66636257	0.86[ASN][1000 genomes]
rs67189039	0.86[ASN][1000 genomes]
rs6765836	0.94[ASN][1000 genomes]
rs6772134	0.92[ASN][1000 genomes]
rs6779492	1.00[ASN][1000 genomes]
rs67797381	0.86[ASN][1000 genomes]
rs6793629	0.94[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.89[ASN][1000 genomes]
rs6793647	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6798785	0.96[ASN][1000 genomes]
rs6803889	1.00[ASN][1000 genomes]
rs71308158	0.86[ASN][1000 genomes]
rs7610506	0.88[ASN][1000 genomes]
rs7615900	0.96[ASN][1000 genomes]
rs7639373	0.94[CHB][hapmap];0.89[JPT][hapmap];0.88[ASN][1000 genomes]
rs7641099	0.89[ASN][1000 genomes]
rs7644248	0.92[ASN][1000 genomes]
rs7646117	0.96[ASN][1000 genomes]
rs7652174	1.00[ASN][1000 genomes]
rs937507	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs937561	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752972	chr3:176924298-177425298	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv931055	chr3:177229521-177889872	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv998537	chr3:177403421-177425648	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1009087	chr3:177405231-177422275	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:177392400-177418800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:177398800-177421600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:177411000-177413000	Enhancers	HUVEC	blood vessel
4	chr3:177411200-177412800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:177411200-177413000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr3:177411200-177413000	Enhancers	Fetal Lung	lung
7	chr3:177411200-177413000	Enhancers	NHLF	lung
8	chr3:177411400-177412800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:177411400-177413000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:177411400-177414400	Enhancers	Dnd41	blood
11	chr3:177411600-177412800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:177411600-177413000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr3:177411600-177413000	Enhancers	Adipose Nuclei	Adipose
14	chr3:177411600-177413400	Enhancers	NHDF-Ad	bronchial
15	chr3:177411600-177413600	Enhancers	Primary hematopoietic stem cells	blood
16	chr3:177411600-177413600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:177411600-177413800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr3:177412000-177412800	Enhancers	Primary B cells from peripheral blood	blood
19	chr3:177412000-177412800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:177412000-177412800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:177412000-177412800	Enhancers	Fetal Intestine Small	intestine
22	chr3:177412000-177413000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:177412000-177413000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr3:177412000-177413000	Enhancers	Osteobl	bone
25	chr3:177412000-177413200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr3:177412000-177422200	Weak transcription	Fetal Heart	heart
27	chr3:177412200-177412600	Enhancers	Small Intestine	intestine
28	chr3:177412200-177413000	Enhancers	Muscle Satellite Cultured Cells	--
29	chr3:177412400-177412600	Enhancers	Fetal Brain Male	brain
30	chr3:177412400-177423800	Weak transcription	Thymus	Thymus

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