Variant report

Variant	rs17638639
Chromosome Location	chr2:179026118-179026119
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:179024611..179027361-chr2:179030708..179032973,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10185989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10202989	1.00[CHB][hapmap]
rs10207459	1.00[CHB][hapmap]
rs10497477	1.00[CHB][hapmap]
rs10497478	1.00[CHB][hapmap]
rs10930819	1.00[CHB][hapmap]
rs13006098	1.00[CHB][hapmap]
rs13017026	1.00[CHB][hapmap]
rs13023049	1.00[CHB][hapmap]
rs13026481	1.00[CHB][hapmap]
rs13027582	1.00[CHB][hapmap]
rs13028692	1.00[CHB][hapmap]
rs17330172	1.00[CHB][hapmap]
rs17330290	1.00[CHB][hapmap]
rs17330381	1.00[CHB][hapmap]
rs17402102	1.00[CHB][hapmap]
rs17635803	1.00[CHB][hapmap]
rs17635875	1.00[CHB][hapmap]
rs17635957	1.00[CHB][hapmap]
rs17687170	1.00[CHB][hapmap]
rs17687217	1.00[CHB][hapmap]
rs2043548	1.00[CHB][hapmap]
rs334046	0.81[ASN][1000 genomes]
rs334047	0.93[ASN][1000 genomes]
rs334090	0.92[ASN][1000 genomes]
rs3861373	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875453	chr2:179022751-179060313	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875454	chr2:179022751-179066443	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179023000-179028000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links