Variant report

Variant	rs334090
Chromosome Location	chr2:179022696-179022697
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10185989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10202989	1.00[CHB][hapmap]
rs10207459	1.00[CHB][hapmap]
rs10497477	1.00[CHB][hapmap]
rs10497478	1.00[CHB][hapmap]
rs10930819	1.00[CHB][hapmap]
rs13006098	1.00[CHB][hapmap]
rs13017026	1.00[CHB][hapmap]
rs13023049	1.00[CHB][hapmap]
rs13026481	1.00[CHB][hapmap]
rs13027582	1.00[CHB][hapmap]
rs13028692	1.00[CHB][hapmap]
rs13402629	1.00[CHB][hapmap]
rs13402636	1.00[CHB][hapmap]
rs13405585	1.00[CHB][hapmap]
rs17330172	1.00[CHB][hapmap]
rs17330290	1.00[CHB][hapmap]
rs17330381	1.00[CHB][hapmap]
rs17401951	1.00[CHB][hapmap]
rs17402102	1.00[CHB][hapmap]
rs17635803	1.00[CHB][hapmap]
rs17635875	1.00[CHB][hapmap]
rs17635957	1.00[CHB][hapmap]
rs17638639	0.92[ASN][1000 genomes]
rs17687170	1.00[CHB][hapmap]
rs17687217	1.00[CHB][hapmap]
rs2043548	1.00[CHB][hapmap]
rs3099470	0.81[AFR][1000 genomes]
rs334047	0.85[ASN][1000 genomes]
rs334050	0.83[AFR][1000 genomes]
rs334076	0.81[AFR][1000 genomes]
rs334078	0.97[AFR][1000 genomes]
rs3861373	1.00[CHB][hapmap]
rs55637764	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55722360	1.00[AMR][1000 genomes]
rs55729109	1.00[AMR][1000 genomes]
rs55919122	1.00[AMR][1000 genomes]
rs56158211	1.00[AMR][1000 genomes]
rs56249302	1.00[AMR][1000 genomes]
rs656429	0.91[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179022600-179023000	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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